Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20271
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   0.67 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   0.67 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   0.67 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.7  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 185 EKKGEVIKEAVKRLIEN 235
           +K+ EVIK+ +K L+EN
Sbjct: 81  DKQREVIKKVIKFLVEN 97


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 185 EKKGEVIKEAVKRLIEN 235
           +K+ EVIK+ +K L+EN
Sbjct: 81  DKQREVIKKVIKFLVEN 97


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 185 EKKGEVIKEAVKRLIEN 235
           +K+ EVIK+ +K L+EN
Sbjct: 81  DKQREVIKKVIKFLVEN 97


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 22  DETDFVCLRPRRVCA 66
           DE +F   RP+R C+
Sbjct: 576 DEVEFYKRRPQRACS 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,959
Number of Sequences: 438
Number of extensions: 1502
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)