Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004983BB Cluster: hypothetical protein 3.t00123; n...    32   8.6  
UniRef50_Q4RS53 Cluster: Chromosome 13 SCAF15000, whole genome s...    32   8.6  

>UniRef50_UPI00004983BB Cluster: hypothetical protein 3.t00123; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 3.t00123 - Entamoeba histolytica HM-1:IMSS
          Length = 305

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 329 ANQSESCAVVKSRKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYILER 150
           A QS     ++   ++QNAY +F      +  ++ CN +N   +     + S+T  IL  
Sbjct: 144 ATQSIITLQLQFPTYTQNAYQIFYQSLGPFSCRYSCNCQNYIRYKQKCIYHSTTYIILML 203

Query: 149 HTISGEV 129
           + +SG +
Sbjct: 204 YILSGTI 210


>UniRef50_Q4RS53 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=2; Coelomata|Rep: Chromosome 13
           SCAF15000, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 945

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = -2

Query: 398 RAKHQRRDRXXXXXXXXXXVTCPANQSESCAVVKSRKHSQNAYTLFTYQTNSYRVQWECN 219
           R +H R  R             P  +  +CAV+   +    A  L+T+QT ++  +W   
Sbjct: 286 RRQHVRHGRRQQRGEASGTAGGPTREGCTCAVMMRCQCPCRAKRLWTWQTRTWPTRWRSC 345

Query: 218 LKNRTSWSSLNKHTSSTRYIL 156
            +NRT  +S+++ +S  +  L
Sbjct: 346 RRNRTP-TSISRMSSKEKICL 365


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,839,934
Number of Sequences: 1657284
Number of extensions: 8960345
Number of successful extensions: 16768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16761
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)