Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   1.6  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    27   2.1  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   4.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.5  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.6  

>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 239 RVQWECNL---KNRTSWSSLNKHTSSTRYILERHT 144
           R ++EC +   KNRT W ++++H S + +  +  T
Sbjct: 202 RTRFECRVMKKKNRTQWINIDEHLSQSLHATDTET 236


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 287  HSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYIL 156
            H + AYT+   QT+S  +    N    + W  + K  S+  Y +
Sbjct: 948  HPKQAYTILDSQTHSLFIHVTTNTHLGSEWGDILKSNSNGTYFM 991


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 290 KHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSST 168
           KHS NAY+L   Q + + V  E +LK   +   LN   ++T
Sbjct: 201 KHSLNAYSLTASQFSGHTVCNESSLKPNENSCDLNLSRTAT 241


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 317 ESCAVVKSRKHSQNAYTLFTYQTNSYRVQW 228
           +S  V+ SRK +   YT+  ++T  Y + W
Sbjct: 225 DSPGVMVSRKENSPLYTVNRHKTEGYALDW 254


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +1

Query: 61  NEDCQVDISSL*SECR---RGPICRHTSPLIV 147
           N++ ++ I++  + C+   R PICR T+PL V
Sbjct: 490 NDNSEIRIAAARTCCQVFARDPICRKTNPLAV 521


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 313 DSLWFAGHVTNREKLXTTKL 372
           +  WF+ H TN E+  T +L
Sbjct: 407 NDFWFSSHATNTEQCFTKRL 426


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 257 YQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYILERHTISGE 132
           Y   + ++  + +   R  W   + H SST  I E H  S E
Sbjct: 655 YNKRNSKIDLKKSFSKRFHWKRDSPHMSSTPSISEEHLASEE 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,453
Number of Sequences: 5004
Number of extensions: 38411
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)