Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    27   6.5  

>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
            17458429-17458519,17458623-17459757,17459998-17460077,
            17460449-17460533,17460614-17460705,17461079-17461147,
            17461227-17461263,17461351-17461433,17461695-17461840,
            17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 281  QNAYTLFTYQTNSYRVQWECNLKN----RTSWSSLNKHTSS 171
            Q AYT  T Q NS R Q EC+ +     R    +  KH+SS
Sbjct: 1136 QEAYTTRTIQINSERSQPECSQQQDNDIRVQAKTCEKHSSS 1176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,181
Number of Sequences: 37544
Number of extensions: 249061
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)