Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_40171| Best HMM Match : WD40 (HMM E-Value=0.00071)                  32   0.31 
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   32   0.31 
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -2

Query: 287 HSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYILERHTISGEV*RQMG-- 114
           H+Q+A++  +  T++     + + ++  S  +LN HT  +   L  HT    + R +   
Sbjct: 41  HTQHAHSTRSLNTHTQHAHSDTHTQHARSIRTLNTHTPHSTRTLNTHTQHAHLTRTLNTQ 100

Query: 113 -PRRHSDHRLDIST*Q 69
            P  HS H L+  T Q
Sbjct: 101 TPHVHSTHTLNTYTQQ 116



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
 Frame = -2

Query: 503 HIVTKEDARALHLTSSRSGVXVALSLRITHYVYSRRAKHQRRDRXXXXXXXXXXVTCPAN 324
           H      AR L+  +  +     L++   H   +R      +             TC  N
Sbjct: 154 HTQHAHSARTLNTLTQHAHSTCTLNMHTQHAHSARTLNTLTQHAHSTRTLRHAHSTCTLN 213

Query: 323 Q-SESCAVVKS-RKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYILER 150
             ++     +S   H+Q+A++  +  T++     + + ++  S  +LN HT  +   L  
Sbjct: 214 MHTQHAHSTRSLNTHTQHAHSTRSLNTHTQHAHSDTHTQHARSIRTLNTHTPHSTRTLNT 273

Query: 149 HT 144
           HT
Sbjct: 274 HT 275


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 338  TCPANQSESCAVVKSRKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSST 168
            TC   + E+C   +  KHS + + L  Y T  Y +       +R S  +L+K  S T
Sbjct: 1110 TCDCGEDETCVACRGEKHSDSTHALEDYTT--YSIASSSRRFSRGSSENLSKSASVT 1164


>SB_40171| Best HMM Match : WD40 (HMM E-Value=0.00071)
          Length = 155

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 293 RKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYI 159
           RKH  N   L+   TN +   +EC++       S   H++ST Y+
Sbjct: 57  RKHDSNQSKLYASCTNDHIYMYECSVLGEDPVCSFTGHSNSTFYV 101


>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 293 RKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYI 159
           RKH  N   L+   TN +   +EC++       S   H++ST Y+
Sbjct: 35  RKHDSNQSKLYASCTNDHIYMYECSVLGEDPVCSFTGHSNSTFYV 79


>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -2

Query: 290 KHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYILERHTISGEV*RQMGP 111
           +HS   Y+   + T  +        ++ T+W S  +H  + R+   RH  +     Q   
Sbjct: 82  RHSTTQYSTTQHSTTQHSTTQHSTTQHDTTWHSKTQH-DTARHSTARHDTARHNMAQQDT 140

Query: 110 RRHS 99
            RHS
Sbjct: 141 ARHS 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,243
Number of Sequences: 59808
Number of extensions: 311623
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)