Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916...    29   4.8  
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ...    29   4.8  
BT012672-1|AAT09322.1|  105|Drosophila melanogaster RH68747p pro...    28   8.3  
AL031025-2|CAA19834.2|  535|Drosophila melanogaster EG:9D2.2 pro...    28   8.3  

>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
           protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 308 AVVKSRKHSQNAYTLFTYQTNSYRVQWECN 219
           A +KSR HS N Y  F  Q  +Y ++W+ N
Sbjct: 563 AHLKSRLHS-NKYQQFLNQNPNYEIEWQTN 591


>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
           isoform A protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 308 AVVKSRKHSQNAYTLFTYQTNSYRVQWECN 219
           A +KSR HS N Y  F  Q  +Y ++W+ N
Sbjct: 563 AHLKSRLHS-NKYQQFLNQNPNYEIEWQTN 591


>BT012672-1|AAT09322.1|  105|Drosophila melanogaster RH68747p
           protein.
          Length = 105

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 121 CRHTSPLIVCLSKIYRVLDVCLFNELHE---VRFFRLHSHCTR 240
           CR   P+++C   ++  LD+CLFN +     + FF    H  R
Sbjct: 30  CRVFIPIVLC---VWLTLDICLFNSIRSSFFLFFFLFGRHLNR 69


>AL031025-2|CAA19834.2|  535|Drosophila melanogaster EG:9D2.2
           protein.
          Length = 535

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = -2

Query: 335 CPANQSESCAVVKSRKHSQNAYTLFTYQTNSYRVQWECNLKNRTSWSSLNKHTSSTRYIL 156
           C     ESC V  +++   N   +   + N   ++W+   K+ +S  S+   +SS+    
Sbjct: 188 CRVLTPESCVVTSAKRSELNRIFILRTRLNRMLIRWKSKDKSASSNQSVGGSSSSSSKKK 247

Query: 155 ERHTISGEV*RQMGPRRHSDHR 90
            +    G   R+   RR    R
Sbjct: 248 RKGREGGGDERRRAMRRDDPRR 269


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,056,894
Number of Sequences: 53049
Number of extensions: 438178
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)