Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20270
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 316 NHVRS*SQENTXKTLTHSLLIKRIHIECNGNV 221
           NH R  SQ+N  K    S++        NGN+
Sbjct: 222 NHARLMSQDNHSKEYLVSIMFSHYDRNNNGNL 253


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 191 LNKHTSSTRYILERHTISG 135
           L  H S T YIL ++ ISG
Sbjct: 624 LRIHVSPTTYILLKYPISG 642


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 184 STHLVLGIS*KGTQ*AERCDGRW 116
           S+H+V GI   G    +RC   W
Sbjct: 3   SSHVVRGIEHGGLYYHQRCSRDW 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,328
Number of Sequences: 438
Number of extensions: 2896
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)