Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20265
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   1.1  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   2.0  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   4.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 267 TACSILHGVPTSVNDQVVNYILDDGALALVLVFQALTD-SAVVVTGEDAVVQFLLEFFVR 91
           ++ SILHG P    D+V N+ L      +VLVF+A  D   +V  G+   V   L   V 
Sbjct: 378 SSSSILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLVKQGQKVRVGLPLGRVVP 434

Query: 90  TAH 82
           ++H
Sbjct: 435 SSH 437


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 315 FRLIMAGNFVKLIYRNYNLXLKLGPTLDPANERLAYGD-GKEKNSDLISWKVHYLVGE 485
           +R+ +  ++   +  + N  + +   +  AN R+  G  G E + ++I+WK+   +GE
Sbjct: 316 YRISIRADYPHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGE 373


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 94  NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 201
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 178 NQGKGSIIQNVVNNLIIDGSRNTMEYATSCGSATDSTLSESTSPITLDSS 327
           +Q +GS+ Q+       +GS +T+  +T  G    ST + STS  T   S
Sbjct: 103 SQNQGSLAQS--EQFDFEGSDSTLAASTISGGIYSSTSASSTSSSTATPS 150


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 94  NKELEEKLYNSILTGDYDSAVRQSLE 171
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 255 ILHGVPTSVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAV 121
           +LH  P S  D  +  I  DGALA +    +   SA+     D +
Sbjct: 121 LLHLYPKSSIDVYIQVIESDGALATLAAAISCASSAIADANIDCI 165


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 180 VLVFQALTDSAVVVTGEDAVVQFLLEFFV 94
           +  F  +T   V+V  EDAVV+F+L   V
Sbjct: 178 IYFFLGVTVQYVMVLPEDAVVEFVLTILV 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,733
Number of Sequences: 5004
Number of extensions: 33633
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)