Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20265
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0206 - 18493178-18495310                                         28   3.5  
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    28   4.6  
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    27   6.1  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   6.1  
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624...    27   8.1  
03_06_0048 - 31274899-31277193                                         27   8.1  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     27   8.1  

>03_04_0206 - 18493178-18495310
          Length = 710

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 129 DAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHHEKF 10
           + V   ++    +  H YRG+F D  +  E  R+E + KF
Sbjct: 364 NTVCNEIIHLHDKNLHVYRGNFDDFESGYEQKRKEMNRKF 403


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 369 LXLKLGPTLDPANERLAYGDGKEKNSDLISWKVHYLVG 482
           + L  GP L P N   A+G G E  S   + +  ++ G
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATRARWVTG 183


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 178 NQGKGSIIQNVVNNLIIDGSRNTMEYATSCGSATD 282
           N G  + +   + NL+++G+R TME+  S  +A++
Sbjct: 298 NLGLTAYLIGNMTNLVVEGTRRTMEFRNSIRAASN 332


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 267  TACSILHGVPTSVNDQVVNYILDDGALA 184
            T C+I H +PT ++  +V  +L DG +A
Sbjct: 1449 TVCTIAHRIPTVIDSDLV-LVLSDGKIA 1475


>03_06_0566 +
           34760991-34761186,34761283-34761455,34762370-34762416,
           34762546-34762640,34762734-34762816,34763331-34763399,
           34763874-34764059,34764374-34764508,34764774-34764908,
           34765148-34765218,34765393-34765470,34765626-34765767,
           34765940-34766050
          Length = 506

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 264 ACSILHGVPTSVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLL 106
           +CS+L+       +++V    D+GAL   L        AV +  E  V QF+L
Sbjct: 415 SCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEGIVPQFIL 467


>03_06_0048 - 31274899-31277193
          Length = 764

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 454 MRSLFFSLPSPYASLSFAGSRVG 386
           MR+   S P+P AS+ FAG++VG
Sbjct: 461 MRAYALSDPNPTASIVFAGTQVG 483


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -2

Query: 168 QALTDSAVVVTGEDAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHH 19
           Q  T +  +     A  Q  LE F+  A A  G     GADG    R HH
Sbjct: 64  QGATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,416,987
Number of Sequences: 37544
Number of extensions: 240871
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)