Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20265
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   2.7  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     28   4.7  
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       28   4.7  
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)                      28   4.7  
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     27   6.3  
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      27   8.3  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         27   8.3  

>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 369 LXLKLGPTLDPANERLAYGD 428
           + +KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 SCGSATDSTLSESTSPITLDSSWP 333
           S GS TDS  S STSP+ L  + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642


>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1551

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 269 PQLVAYSMVFRLPSMIRLLTTFWMMEPLP 183
           P ++ Y  V+RLP+ IR  T +    P+P
Sbjct: 732 PTVIRYPAVYRLPTAIRYPTVYRERHPVP 760


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 94  NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSRNTMEYATSCGS 273
           + E  E+    I   DY++   + ++ E  G  S+ ++  N      +R T+   T C S
Sbjct: 171 SSEKSERYIEKIRKADYENLPDEDVQ-ECAGLDSV-RDSTNTKCFSATRATVATNTKCYS 228

Query: 274 ATDSTLSEST 303
           AT +T++ +T
Sbjct: 229 ATRATMATNT 238


>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 94  NKELEEKLYNSILTGDYDSAVRQSLE-YENQGKGSIIQNVVNNL-IIDGSRNTMEYATSC 267
           N E+   LY S   G+    +R S + Y      SI      +L ++DGS + +  A+ C
Sbjct: 49  NGEVRNPLYPSFYHGNCTRTIRLSSDLYIRLNVTSINVTCPASLKVLDGSSSNLTIASLC 108

Query: 268 GSATDSTLSESTS 306
           G++  S    ST+
Sbjct: 109 GTSAPSYAMYSTA 121


>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 SCGSATDSTLSESTSPITLDSSWP 333
           S GS TDS  S STSP+ L  + P
Sbjct: 64  SAGSGTDSASSRSTSPLNLPYTSP 87


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 100 ELEEKLYNSILT---GDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSRNTME 252
           +LE+   N +L+   G +D   R     + +GKGS   NV +   +DG  +++E
Sbjct: 571 DLEDHYKNKLLSIADGSFDGTYRHRFMGKGKGKGSFGFNVPDRKELDGYLSSVE 624


>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 345  KLIYRNYNLXLKLGPTLDPANERLAYGDGKEKNSDLISWK 464
            KL+Y N +   KL  TL    E  A  DG  K +   +WK
Sbjct: 1040 KLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWK 1079


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 195  HHPECS*QPDH*RKSEHHGVCYKLWVGNGQHI-VRKYFPYNFRLIMAGNFVKLIYRNY 365
            HH      P H R   HH   Y+L   +  H  V ++ P+++R++    F   + R++
Sbjct: 999  HHHHYHYHPFHYRLLRHHSFHYRLLRHHPFHYRVLRHHPFHYRVLRHHPFYYRVLRHH 1056


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 240  PTSVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHAYRGHF 64
            P  + D +V  IL DG   + +VF A+T S+   +    +++ L++  +R    YR H+
Sbjct: 955  PGPLGDHIVRRILKDGTEEMDIVF-AMTLSS--TSPHTMLMKTLIQMLIRRYGIYRIHY 1010


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,157,162
Number of Sequences: 59808
Number of extensions: 275797
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)