Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20265
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-10|AAB69875.3|  381|Caenorhabditis elegans Hypothetical...    28   4.2  
Z77663-4|CAB01213.1|  605|Caenorhabditis elegans Hypothetical pr...    27   5.5  

>AF022967-10|AAB69875.3|  381|Caenorhabditis elegans Hypothetical
           protein C13A2.3 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 488 LFSHKVMNFPTDEVAVLFLTIAVCKSLVRGIKSG 387
           LFS+K +NF T  VA+  + I + K+  + I  G
Sbjct: 8   LFSNKALNFITFSVAIALIFIIITKTTQKSILLG 41


>Z77663-4|CAB01213.1|  605|Caenorhabditis elegans Hypothetical
           protein F53F4.4 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 154 VRQSLEYENQGKGSIIQNVVNNLIIDGSRNTMEYATSCGSATDSTL 291
           V Q ++  + G G  ++   +  + +GSR+  ++  + G+ TD TL
Sbjct: 422 VEQEIDEGSDGSGESLEGSGSGDVPEGSRDKKKWENTPGNLTDETL 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,100
Number of Sequences: 27780
Number of extensions: 198184
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)