Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20265
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.11 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.25 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 97  KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSRNTMEYA 258
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I      TMEY+
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYS 81


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 97  KELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSRNTMEYA 258
           +E E+++ ++IL G YD+ +R S E    G   +  N+    I   S   MEY+
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYS 81


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 257 AYSMVFRLPSMIRLLTTFWMMEPLPW 180
           AY+M F         T F  ++P PW
Sbjct: 212 AYNMTFAQNGPFNTTTIFVPVKPCPW 237


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 291 QCAVRCRPTACSILHGVPTSVNDQVVNYILDD 196
           Q A  C P+      GVPTSV     + + DD
Sbjct: 389 QFATPCTPSPPRGPGGVPTSVIQAATSSVSDD 420


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 196 WSPCLGSRIPSSDGQRCRSHR 134
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,190
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)