Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20263
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   1.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   2.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   2.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   7.9  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 355 RNLLKVPYCALGPMRGKPLGRSLASXPPSI 444
           R LL+   CA G     P+GR L S  P +
Sbjct: 43  RYLLRQLKCATGEAPCDPVGRRLKSLAPLV 72


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 384 GTVRNLQQVPTYFVWLHVL 328
           G   N+  +P YF WL  L
Sbjct: 573 GFFLNVSSIPIYFKWLSFL 591


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 384 GTVRNLQQVPTYFVWLHVL 328
           G   N+  +P YF WL  L
Sbjct: 573 GFFLNVSSIPIYFKWLSFL 591


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 89  DFMTPIELCKAGLNVDMTYKPYVE 160
           D+ +  E C    N+D T +P ++
Sbjct: 76  DYSSEYEKCDLPFNIDCTSRPKLQ 99


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 173 QMHPSRRTVCKSCRR 129
           ++ P R+ +CK C R
Sbjct: 73  KLKPKRQFICKYCNR 87


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 384 GTVRNLQQVPTYFVWLHVLHVVAE 313
           GT++   Q+ + F  + VLHVV +
Sbjct: 93  GTLKLWSQLFSTFAGIEVLHVVKQ 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,071
Number of Sequences: 336
Number of extensions: 2400
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)