Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20263
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    29   0.49 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   4.5  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   6.0  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   7.9  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 38  VEPGLFEFKNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGE 208
           VE  + + K   MP+G +     E+C  G+NV   Y      + S+ T D FF+ G+
Sbjct: 336 VELKILDQKGNEMPQGKEG----EICVRGINVTKGYLNNPAANKSSFTKDRFFRTGD 388


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 255 VPPSFSVSLTXACIATSPRLKNSSIVSADASISTYGL*VMSTLRPALHSS 106
           VPPS SVS   +   T+P    + +VS  A+ + + L V ++  P+  S+
Sbjct: 144 VPPSASVSRANSTATTTPH--KAGVVSNPAAANVHVLSVAASPNPSTPSN 191


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = -3

Query: 84  PLGMCQFL----NSNKPGSTLIFTDGSARKP 4
           PLG C ++    N+NK G  ++ TDG    P
Sbjct: 690 PLGNCSWVQQAKNTNKAGLLILITDGEFINP 720


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 PPSFSVSLTXACIATSPRLKNSSIVSA 172
           PP +S     A  ATS +L  S++VSA
Sbjct: 386 PPKYSQGFVLAVPATSDKLLPSALVSA 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,801
Number of Sequences: 5004
Number of extensions: 40081
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)