Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20263
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 36 0.013
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 31 0.64
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 29 2.6
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 29 2.6
08_01_0229 + 1834102-1834358,1834442-1834901 28 3.4
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319 28 3.4
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 28 4.5
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 28 4.5
06_01_0169 - 1346281-1349188,1350069-1350184 28 4.5
01_06_1052 + 34129126-34130490 28 4.5
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906... 27 6.0
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 27 7.9
04_03_0928 + 20882398-20882689,20882840-20882958,20883208-208833... 27 7.9
01_06_0410 + 29146016-29146428,29146504-29146861,29147454-291474... 27 7.9
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 36.3 bits (80), Expect = 0.013
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 289 QMVGALHRLRDDMEDVQPYEI-GRNLLKVPYCALGPMRGKPLG-RSLASXPPSINSSSGR 462
QM+G L + D ++++P+++ G ++K+P C + G R +S SINS GR
Sbjct: 606 QMLGELVAVMQDFDELEPFDVRGGRMIKLPLCIYQSPKVSSFGRRHHSSSSSSINSGGGR 665
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 125 LNVDMTYKPYVEMDASAETMDE 190
L VD+TYKP+ E D+ +T DE
Sbjct: 469 LTVDVTYKPFKEGDSDVDTSDE 490
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -3
Query: 234 SLTXACIATSPRLKNSSIVSADASISTYGL*VMSTLRPALHSSMGVMKSIPLGMCQFLN 58
++T C ++ P KN I S L ++S A+H + +P MC LN
Sbjct: 73 AVTGLCTSSCPHPKNMVIADLGCSSGPNALTLVSAAVDAIHRYCAQHEQLPPEMCVLLN 131
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 4 RLACGPVREDQSRAGLVRV*ELAHAQGNRLHDAHRTVQ 117
R+AC VRE + R + E +H+Q N +++ H ++
Sbjct: 524 RIACSEVREFEYRDSDAQYMETSHSQANGINEMHLQIR 561
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +2
Query: 203 GEVAMQAXVNDTEKDGGT*YS--LGTRSHWTRWWERCTDSATTW 328
G AM V + DGGT +G R W RW R AT W
Sbjct: 114 GRTAMGDAVEEVG-DGGTGVDGVVGERRRWRRWGRRRGGGATRW 156
>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
Length = 249
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 334 RPPCRRGVGAALPPS 290
RPPCRRG A PP+
Sbjct: 12 RPPCRRGPAAVAPPA 26
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 86 IDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKR 202
+ F+ + C V + P+V +++ET+DEFF+R
Sbjct: 183 LHFLASQKRCADQFTVIVRNIPHVSSHSTSETVDEFFRR 221
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 184 HCLGRC-IHLDVRFVSHVDVEAGLAQFDGRHEVDSLG 77
H L C + LD + H D EA + + GR+ DS+G
Sbjct: 367 HKLLTCKLDLDCKKTLHFDSEASMIRIQGRNSKDSIG 403
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 HDAHRTVQGRPQRRHDLQTVRRDG 165
H++ + +G+P R HDL T RDG
Sbjct: 245 HESLKRFEGKPIRAHDLGTHLRDG 268
>01_06_1052 + 34129126-34130490
Length = 454
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 367 SAGSYLFRMAARPPCRRGVGAALPPSGPV*SRAQ 266
S G Y AR P R G A PP P SR+Q
Sbjct: 144 SIGEYHSGPLARKPRRGGTNATAPPPPPALSRSQ 177
>02_05_1228 +
35086576-35087139,35089125-35089268,35090436-35090600,
35090722-35090796,35091468-35091671
Length = 383
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 219 RPXSTTPKKTAVRNIHWARDH 281
RP +TTP + VR ++W DH
Sbjct: 123 RPDATTPVEETVRAMNWVIDH 143
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 7 LACGPVREDQSRAGLVRV*ELAHAQGNRLHDAHRTVQG 120
LA P R Q + L R EL H + R H +HR G
Sbjct: 26 LAVPPSRSLQVWSNLARRGELTHPRHRRFHRSHRFCSG 63
>04_03_0928 +
20882398-20882689,20882840-20882958,20883208-20883330,
20883768-20883866,20883978-20884022,20884295-20884390
Length = 257
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 379 STEPSAGSYLFRMAARP-PCRRGVGAALPP 293
ST G +LF RP P RR AA+PP
Sbjct: 35 STSGRRGLFLFASRCRPGPRRRAASAAVPP 64
>01_06_0410 +
29146016-29146428,29146504-29146861,29147454-29147495,
29148491-29148721
Length = 347
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 IHWARDHT--GPDGGSAAPTPRRHGGRAAIRNR 353
++W H+ G GG+ + P HG +RNR
Sbjct: 108 LYWRHRHSSSGARGGTLSDDPEMHGANDPLRNR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,955
Number of Sequences: 37544
Number of extensions: 325578
Number of successful extensions: 1111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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