Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20263
(482 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_14434| Best HMM Match : RVT_1 (HMM E-Value=8e-34) 29 1.5
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27) 28 4.6
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) 27 8.1
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 31 DQSRAGLVRV*ELAHAQGNRLHDAHRTVQGRPQRRHDLQTVR 156
D+ +A +R+ + A NRLHD H + R + RH++ R
Sbjct: 836 DRHKASRIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKR 877
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 31 DQSRAGLVRV*ELAHAQGNRLHDAHRTVQGRPQRRHDLQTVR 156
D+ +A +R+ + A NRLHD H + R + RH+ R
Sbjct: 902 DRHKASRIRLHDRHEASRNRLHDRHEASRNRLRDRHEASRKR 943
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 30.7 bits (66), Expect = 0.66
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 47 GLFEFKNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQ 220
GLFEF P + + +E C GLN+D+ ++ A T +E R E +Q
Sbjct: 513 GLFEFNRMPFPATLQRL--MERCLTGLNLDICLAYLDDVIVFARTSEEMLHRLEAVLQ 568
>SB_14434| Best HMM Match : RVT_1 (HMM E-Value=8e-34)
Length = 335
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +2
Query: 47 GLFEFKNWHMPKGID-----FMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEV 211
GLFEF MP G+ F +E C GLN+++ ++ A T +E R E
Sbjct: 144 GLFEFNR--MPVGLTNSPATFQRLMERCLTGLNLNICLAYLDDVIVFARTFEEMLHRLEA 201
Query: 212 AMQAXVNDTEKDGG 253
+Q K GG
Sbjct: 202 VLQRLRACGHKRGG 215
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 208 FAAFEELVHCLGRCIHLDVRFVSHV 134
+ + ++ CL C+HL VR SHV
Sbjct: 1310 YPSVSRVLTCLSACVHLSVRVCSHV 1334
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 227 VNDTEKDGGT*YSLGTRSHWTRWWERCTDSAT 322
V + + D T SL SH++RW RC S T
Sbjct: 187 VTNEKSDTRTCLSLSWLSHFSRWLPRCCQSRT 218
>SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27)
Length = 751
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 47 GLFEFKNWHMPKGID-----FMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEV 211
GLFEF MP G+ F +E C GLN+++ ++ A T +E R E
Sbjct: 233 GLFEFNR--MPFGLTNTPATFQRLMERCLTGLNLNICLAYLDDVIVFARTFEEMLHRLEA 290
Query: 212 AMQ 220
+Q
Sbjct: 291 VLQ 293
>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 47 GLFEFKNWHMPKGID-----FMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEV 211
GLFEF MP G+ F +E C GLN+++ ++ A T +E R E
Sbjct: 421 GLFEFNR--MPFGLTNSPATFQRLMERCLTGLNLNICLAYLDDVIVFARTFEEMLHRLEA 478
Query: 212 AMQ 220
+Q
Sbjct: 479 VLQ 481
>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 260 YSLGTRSHWTRWWERCTDSA 319
Y L T W +W ERCT+ +
Sbjct: 56 YGLATVEGWDKWLERCTEES 75
>SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 139 HVDVEAGLAQFDGRHEV--DSLGHVPVLKLEQARLYF 35
+VD E L G H + DS HV +K ++ RLY+
Sbjct: 47 YVDGETMLTGVQGVHSILIDSSSHVMAVKCKECRLYY 83
>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
Length = 1208
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 340 PYEIGRNLLKVPYCALGPMRG 402
P E R+LL+VP C L P RG
Sbjct: 1186 PKENSRHLLEVPSCRLVPARG 1206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,249
Number of Sequences: 59808
Number of extensions: 335281
Number of successful extensions: 893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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