Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20263
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical pr...    40   0.001
U29154-3|AAA68419.2|  283|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    28   3.1  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    28   3.1  
U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical ...    27   5.4  

>U28929-2|AAN63411.1|  306|Caenorhabditis elegans Hypothetical
           protein F09C12.8 protein.
          Length = 306

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
 Frame = +2

Query: 32  IKVEPGLFEFKNWHMPKGID-FMTPIELCKAGLNVDMTYKPYVEMD---ASAETMDEFFK 199
           ++VEPGLFE  N+H P G+  F++  +L +    VD T++P++ ++      ET DE+  
Sbjct: 150 LRVEPGLFE--NFHYPHGVPRFIS--QLQRHVFPVDKTFRPFLSLETVVGKQETNDEYNA 205

Query: 200 RGEVAMQAXVNDTE 241
           R ++ + A  + +E
Sbjct: 206 RIQLILNAIADQSE 219



 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 256 VIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGPMRGK 405
           V+ + HA T+D  VG L   R+    ++  E+    + VPYC+L  ++ K
Sbjct: 229 VLVVAHASTVDMAVGLL---REVPRKIREEELDNIAIPVPYCSLAYLKKK 275


>U29154-3|AAA68419.2|  283|Caenorhabditis elegans Hypothetical
           protein T07F12.1 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 5   GLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNVDMTYKP-YVEMDASA-E 178
           G+  D  ++  VEPGL+E+  +       ++ P +L K G  V   Y P + + +    E
Sbjct: 105 GMGLDKRIQFSVEPGLYEWMVFARYARPCWIPPKDLKKLGYPVQENYVPCWTDKELRMNE 164

Query: 179 TMDEFFKR 202
           T+ +F++R
Sbjct: 165 TLADFYQR 172


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 304 LHRLRDDMEDVQPYEIGRNLLKVPYCALGPMRGKPL 411
           L +L+ D + V P     +L +VP  ALGP+  KP+
Sbjct: 837 LSKLKSDRQHVPPPPRPEDLSEVPTKALGPILQKPM 872


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 304 LHRLRDDMEDVQPYEIGRNLLKVPYCALGPMRGKPL 411
           L +L+ D + V P     +L +VP  ALGP+  KP+
Sbjct: 837 LSKLKSDRQHVPPPPRPEDLSEVPTKALGPILQKPM 872


>U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.1a protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 286 DQMVGALHRLRDDMEDVQPYE 348
           DQ+VGAL +L  D+E V P E
Sbjct: 456 DQVVGALQKLESDIEFVAPCE 476


>AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical
           protein Y48A6C.1 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/79 (20%), Positives = 38/79 (48%)
 Frame = -2

Query: 274 RAQ*ILRTAVFFGVVDXGLHRYFAAFEELVHCLGRCIHLDVRFVSHVDVEAGLAQFDGRH 95
           R Q I   A  +  +D  ++++ +AF+ + + +   +HL    + + + EA +  F    
Sbjct: 255 RQQLIHHYATPYDAIDDAIYQFRSAFDLIPYWIDNIVHLGKALLYNENKEAAIGMFRLAL 314

Query: 94  EVDSLGHVPVLKLEQARLY 38
           ++D+    PV +  ++  Y
Sbjct: 315 KMDNSKAFPVSRDPRSNEY 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,860
Number of Sequences: 27780
Number of extensions: 242705
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)