Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20263
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 213 RCRPXSTTPKKTAVRNIHWARDHTGPDGGSAAPTPR 320
           +C     TP K +  ++H++    G       PTPR
Sbjct: 354 KCNTLERTPSKCSQTSVHYS---NGQTHSQLCPTPR 386


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 379 CALGPMRGKPLGRSLASXPPSI 444
           CALG     P+GR L S  P +
Sbjct: 54  CALGEAPCDPVGRRLKSLAPLV 75


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 379 CALGPMRGKPLGRSLASXPPSI 444
           CALG     P+GR L S  P +
Sbjct: 54  CALGEAPCDPVGRRLKSLAPLV 75


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 62 KNWHMPKGID 91
          +NW  PKGID
Sbjct: 32 RNWRKPKGID 41


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 293 WWERCTDSATTWRTCSHTK 349
           WWER    +  W T S T+
Sbjct: 76  WWERYQPISYKWITRSGTR 94


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/36 (25%), Positives = 12/36 (33%)
 Frame = +3

Query: 216  CRPXSTTPKKTAVRNIHWARDHTGPDGGSAAPTPRR 323
            CR    TP     ++      + GP      P P R
Sbjct: 1333 CRNSRRTPVPRLAQDSSEDESYRGPSASGGRPVPER 1368


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 322 DMEDVQPYEIGRN 360
           D+ D + Y++GRN
Sbjct: 50  DLSDAEWYDVGRN 62


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 322 DMEDVQPYEIGRN 360
           D+ D + Y++GRN
Sbjct: 50  DLSDAEWYDVGRN 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,465
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)