Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20263
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id...    27   5.0  
At3g09940.1 68416.m01190 monodehydroascorbate reductase, putativ...    27   5.0  
At5g63910.1 68418.m08025 expressed protein                             27   6.6  
At4g33560.1 68417.m04769 expressed protein                             27   8.8  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    27   8.8  

>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
           identical to peroxisome biogenesis protein PEX1
           [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
           Pfam profile PF00004: ATPase, AAA family; identical to
           cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
           partial cds GI:12006271
          Length = 1130

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 379 CALGPMRGKPLGRSLASXPPSINSSSGRFDWRI 477
           C +GP+      +SL   P ++ SSSGRFD+ +
Sbjct: 708 CGIGPLAFVASVQSLEQIPQTL-SSSGRFDFHV 739


>At3g09940.1 68416.m01190 monodehydroascorbate reductase, putative
           similar to monodehydroascorbate reductase (NADH)
           GB:JU0182 (Cucumis sativus)
          Length = 441

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 56  EFKNWHMPKGIDFMTPIELCKAGL 127
           ++ NW+  KGID +   E+ KA L
Sbjct: 78  QYPNWYKEKGIDLIVGTEIVKADL 101


>At5g63910.1 68418.m08025 expressed protein
          Length = 500

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 104 IELCKAGLNVDMTYKPYVEMDASAETMDEFFKR 202
           I + +     DMTYK +    AS   +DE F R
Sbjct: 384 ISILRKYSKTDMTYKIFTRQPASDSLLDELFSR 416


>At4g33560.1 68417.m04769 expressed protein
          Length = 95

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 174 PRQWTSSSNAAK*RCRPXSTTPKKTA 251
           P   TSSS+A   R +P STTP +T+
Sbjct: 53  PSPPTSSSSATSIRSKPLSTTPFETS 78


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 17   DPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVEMD 166
            DPS ++K+EPGL        P G   +  +E   +    D  +KP   M+
Sbjct: 1969 DPSKRVKIEPGLQSICVM-SPGGASSIPNVETPGSATQPDEEFKPNAAME 2017


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,927
Number of Sequences: 28952
Number of extensions: 229746
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)