Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20260
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    54   1e-08
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   6.4  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   8.5  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +3

Query: 282 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 461
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 462 YLITCGY 482
           YL+  GY
Sbjct: 121 YLVGVGY 127



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 106 MSWQDYVDKQLMASRCVTKAAIAGHDG-NVWAKSEGFEISKDEVAKIVAGLR 258
           MSWQ YVD  L+ +  + +AAI    G +VWA S GF +S  E+  + AG +
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQ 52


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 188 MCGQSRKASKFQKMKWRR 241
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 584 YXLYRNIQNAVTYFPRWKKILSYSTLDH 501
           Y L+  +   + YFP W K    S  DH
Sbjct: 146 YSLFSTLAPNLKYFPDWLKEAGVSVSDH 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,464
Number of Sequences: 5004
Number of extensions: 47763
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)