Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20260
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 58 4e-09
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 58 4e-09
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 56 3e-08
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 31 0.70
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 6.6
07_03_1337 + 25873510-25873622,25874846-25874927,25875010-25875168 27 8.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 8.7
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 ENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 431
+ L G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q
Sbjct: 55 DEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQ 114
Query: 432 AASVVEKLGEYLITCG 479
VVE+LG+YL+ G
Sbjct: 115 CNMVVERLGDYLVEQG 130
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 106 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGFEISKDE 231
MSWQ YVD+ LM +T AAI GHDG VWA+S F K E
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPE 45
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 ENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQ 431
+ L G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q
Sbjct: 55 DEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQ 114
Query: 432 AASVVEKLGEYLITCG 479
VVE+LG+YL+ G
Sbjct: 115 CNMVVERLGDYLVEQG 130
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 106 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGFEISKDE 231
MSWQ YVD+ LM +T AAI GHDG VWA+S F K E
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPE 45
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +3
Query: 270 LTSGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVV 446
L G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +V
Sbjct: 60 LAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIV 119
Query: 447 EKLGEYLITCG 479
E+LG+YLI G
Sbjct: 120 ERLGDYLIEQG 130
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 106 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGFEISKDE 231
MSWQ YVD LM +T AAI GHDG+VWA+S F K E
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPE 45
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 263 ITANEWRRDDSGHAV-HLPQWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSA 430
+ A W + + ++ +W R Y P W+ GRRA D S+ T PT
Sbjct: 14 LRARNWSTEQATKSLKETVKWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIK 73
Query: 431 GRICRGEVRRIFNYLWLLE 487
GR+ E +I ++++LLE
Sbjct: 74 GRVSGKE--QIKHFVYLLE 90
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 275 EWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTA 385
E RRD + +WH+ Y R+A QG A + + A
Sbjct: 684 ETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
>07_03_1337 + 25873510-25873622,25874846-25874927,25875010-25875168
Length = 117
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 422 TSAGRICRGEVRRIFNYLWLLEVEARRDLEYYKIKF 529
+SAG R RR+ + W LE++ R+ YY +++
Sbjct: 5 SSAGAAARSGRRRL-DLDWSLEIDERKGKRYYSVRY 39
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 324 CH*GRCTACPLSSRR 280
CH G+C CPL RR
Sbjct: 324 CHAGKCGGCPLQGRR 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,492
Number of Sequences: 37544
Number of extensions: 336062
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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