Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20260
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   36   0.033
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  30   1.6  
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)                    27   8.8  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 154 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGLR 258
           V +AAI G DG+ WA S GF +S+ E  +++  L+
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLK 41



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 288 TIAGTRYIYLSGTDH--IIRAKLGKVGVHCM-KTQQAVVISLYEEPIQPQ-QAASVVEKL 455
           TI G +Y+ L       I   KL   G  C+  T+QA+VI  YEE         +VVE+L
Sbjct: 49  TIGGAKYMMLRNDQESKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQL 108

Query: 456 GEYLITCGY 482
            +YL   GY
Sbjct: 109 AQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 282 GVTIAGTRYIYLS-GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 458
           GV +  T+Y  +     H +  + G  G   + T Q ++I  Y E + P   ++V EKL 
Sbjct: 504 GVCLNRTKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLA 563

Query: 459 EYLITCGY 482
           +Y    G+
Sbjct: 564 DYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 336 IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 458
           +  K  K G+  +KT   ++++LY + + P       EKLG
Sbjct: 36  VYGKHDKTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 392 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 276
           HSL C    +A LA +R   ++CAT    P A  RH+ T
Sbjct: 71  HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 392 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 282
           HSLLC    +A LA +R   ++CA     P A  RH+
Sbjct: 37  HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 DKQLMASRCVTKAAIAGHDG-NVWAKSEGFEISKDEVAKIVAGLRM 261
           D+     R +TK A+A  DG  +W +   +EI  D VA  VA LR+
Sbjct: 774 DRASGLGRVLTKEALASKDGETIWFR-HTYEICLDPVACPVANLRL 818


>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
          Length = 430

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 287 DDSGHAVHLPQWHRPYHPREAWQ-GRR 364
           DD+  A   P W +P H + AW+ G+R
Sbjct: 256 DDTLRARRPPAWRQPVHAKSAWRTGKR 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,315
Number of Sequences: 59808
Number of extensions: 381972
Number of successful extensions: 979
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)