Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20260
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    24   3.3  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   5.7  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   7.5  

>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 338 PREAWQGRRALHEDTASCGHFSL*RTHPTS 427
           P E  +GR +   D    GH S  RTH  S
Sbjct: 112 PEEKLRGRHSSESDREGMGHDSHKRTHRLS 141


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 245 TIFATSSFEISKPSDF-AHTL 186
           T+  ++SFE+ KP DF  H+L
Sbjct: 845 TLTESTSFELKKPKDFRKHSL 865


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 108 HFD*VQLKIKLHLNTRYSSQRA-NAPHEQKALE 13
           H   VQ K +LH NT+Y  + +   P +++ L+
Sbjct: 331 HHTPVQFKTELHDNTQYDEELSPQNPDDEELLD 363


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,178
Number of Sequences: 2352
Number of extensions: 12508
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)