Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20260
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    52   4e-07
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    52   4e-07
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    37   0.013
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    37   0.013
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    36   0.022
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    36   0.022

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +1

Query: 106 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDE 231
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEE 42



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +3

Query: 270 LTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 449
           L   G+ + G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +    
Sbjct: 56  LLGTGLRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTG 115

Query: 450 KLGEYLITCGY 482
            L +Y  +  Y
Sbjct: 116 ALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +1

Query: 106 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDE 231
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEE 42



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +3

Query: 270 LTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 449
           L   G+ + G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +    
Sbjct: 56  LLGTGLRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTG 115

Query: 450 KLGEYLITCGY 482
            L +Y  +  Y
Sbjct: 116 ALADYFRSIKY 126


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 282 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 458
           G  +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 459 EYLITCGY 482
           +YL + GY
Sbjct: 124 QYLASSGY 131



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 112 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS 204
           W DY+      S  + +AAI G DG+VWA+S
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARS 34


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 282 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 458
           G  +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 459 EYLITCGY 482
           +YL + GY
Sbjct: 124 QYLASSGY 131



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 112 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS 204
           W DY+      S  + +AAI G DG+VWA+S
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARS 34


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +1

Query: 112 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVA 249
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVA 53


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +1

Query: 112 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVA 249
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVA 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,339
Number of Sequences: 27780
Number of extensions: 276315
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)