Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20260
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          137   7e-35
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  137 bits (332), Expect = 7e-35
 Identities = 61/76 (80%), Positives = 70/76 (92%)
 Frame = +3

Query: 255 ENESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQA 434
           E + +LTS GVT+AG RYIYLSGTD +IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQA
Sbjct: 51  EEQDILTSSGVTLAGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQA 110

Query: 435 ASVVEKLGEYLITCGY 482
           ASVVEKLG+YL++CGY
Sbjct: 111 ASVVEKLGDYLVSCGY 126



 Score = 91.9 bits (218), Expect = 4e-21
 Identities = 40/49 (81%), Positives = 46/49 (93%)
 Frame = +1

Query: 106 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAG 252
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQG 49


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 583 IXFIEIYKMQLLIFPGGKK 527
           +  +EI K   + FPGGKK
Sbjct: 232 LGLMEIIKFVNIFFPGGKK 250


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 566 IQNAVTYFPRWKKILSYSTLDHGELRPLITTGN*IFS*LLHDRCGLLRLDG 414
           ++  + Y   WK ++   T    +L  LI TG  I    +HD    L L G
Sbjct: 306 LKGQMIYMDNWKMMMYLGTPVMPDLNALIATGLYINDLSMHDFSRDLMLAG 356


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 422 LDGFFIERNDHSLLCLH 372
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 205 PTL-PTHCHHDRQWQLL*HI 149
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 118 DYVDKQLMASRCVTKAAIAGHDGN 189
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 584 YXLYRNIQNAVTYFPRWKKI 525
           Y LY+NI   ++YF R+KK+
Sbjct: 421 YMLYQNI---LSYFLRYKKL 437


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 366 HCMKTQQAVVIS 401
           HC+ T+Q+VV++
Sbjct: 822 HCVTTEQSVVVT 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,682
Number of Sequences: 438
Number of extensions: 3177
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)