Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20257
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    27   0.098
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    20   8.5  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    20   8.5  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 0.098
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 28  LTCHCRDISGASSTESGNLTSTSTS 102
           L+ HC  + G+++  SG  TSTST+
Sbjct: 331 LSLHCAAVGGSANIMSGCSTSTSTN 355


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 40  CRDISGASSTESGNLTSTSTSRRRCGNATTYL 135
           C +    S    G +T T    + CG+A +YL
Sbjct: 319 CNEEERNSHCLGGTITRTMWYFQICGSAFSYL 350


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 179 PRR*GGEGSSVQRNDPCAGRRREKTLLVV 265
           P    G   + +  DPC GR   K  L+V
Sbjct: 22  PENWTGVLDATKEGDPCYGRHFFKKNLIV 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,562
Number of Sequences: 336
Number of extensions: 2070
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)