Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20257
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   4.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   4.8  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    24   8.4  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    24   8.4  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +1

Query: 238 PARKDLTSRSKRRRLSGRT----VGSDPRSPRSVVRAPSDARERQHXGTFQESVSTPK 399
           P ++D +S  K + +   T    +  D     + + APSD R++     F + + TPK
Sbjct: 66  PLKRDFSSMDKLKLIGKITYKLRLKGDTALKFAYLHAPSDVRDKVFDDAFWQEIITPK 123


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 49  ISGASSTESGNLTSTSTSRRRCGNATTY 132
           +S +SST S  LTS+S+S  R  +++++
Sbjct: 372 VSSSSSTSSSTLTSSSSSSSRPASSSSH 399


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 274 RRLSGRTVGSDPRSPRSVVRAP--SDARERQHXG 369
           R ++  T  SDP +P+  ++AP  S+A  R++ G
Sbjct: 274 RSVASETCSSDPNNPKLNLKAPVFSEAPIREYAG 307


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 138  GRIILAPTGKITPYHDARVVKEAAYKGMTRAL 233
            GR+ ++P  +I+P H AR+ K       ++ L
Sbjct: 1100 GRVYMSPLTEISPEHLARLAKNTTLLSYSKPL 1131


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 100 LWMCLSSFPIPSTKLPI 50
           LWM LS  P+ ST +PI
Sbjct: 76  LWMILSRVPLISTFIPI 92


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 211 TKE*PVRWTPARKDLTSRSKRRRLSGRTVGSDPRSPRSVVRAPSD 345
           T+E   +W+  R+D   +    R S R VG    S R    +  D
Sbjct: 211 TEENFKKWSDGRRDRILKQAEERRSNRAVGRSNLSGREYFESNKD 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,564
Number of Sequences: 5004
Number of extensions: 32704
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)