Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20257
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1167 + 28111923-28113218 31 0.50
03_03_0070 - 14256143-14257492 31 0.50
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 29 1.5
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 29 2.0
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 2.7
06_03_0854 + 25400855-25403741,25406174-25407708 28 3.5
05_04_0211 + 19088656-19088965,19089911-19089987,19090964-190910... 28 3.5
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 28 3.5
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 27 4.6
02_03_0243 - 16791789-16793306 27 4.6
04_04_1606 - 34741814-34742684,34742763-34743088 27 6.1
01_06_0746 - 31636024-31641396 27 6.1
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 27 8.1
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 27 8.1
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 27 8.1
>06_03_1167 + 28111923-28113218
Length = 431
Score = 30.7 bits (66), Expect = 0.50
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 55 GASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSL 174
GASS++SG+ + +T++R G++ + Y PG SL
Sbjct: 288 GASSSQSGSAAAAATAKRMAGSSKMRVIPSRYSLTPGASL 327
>03_03_0070 - 14256143-14257492
Length = 449
Score = 30.7 bits (66), Expect = 0.50
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 310 EDRYQLSVRKVDDVLND**GLFAPASSARVIPLYAASFTTLASW*GVIFPVGANIILPPD 131
E R +S+R + D D G +SS+ + + L SW GV+ V A ++ P
Sbjct: 84 EFRTTISIRPLGDGDGDRSGAAVSSSSSFASVRFGSRPFVLGSWDGVVCLVPAGVVRPLS 143
Query: 130 T*SHCHTVADLWMCLSSFPIPSTK-LPIC 47
V L +S P P+T+ + IC
Sbjct: 144 RIDRYVLVNPLTKACTSVPPPATRGIVIC 172
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 165 KITPYHDARVVKEAAYKGMTRALDAGAKRP 254
++TPY DA +V A ++ L GA+RP
Sbjct: 227 RVTPYGDAGIVSLATLSWLSPLLSVGAQRP 256
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +2
Query: 44 ETYRELRRRNRET*QAHPQVGDGVAMRLRIWRQDYIGPDREDHSLPRR*GGEGSSVQRND 223
E +E +RR +E Q Q+ A++ + + +++D + GG+ S VQ D
Sbjct: 415 EAEKEQKRREKEAVQLKKQL----AIQKQASMMERFFKNKKDSEKLEKPGGKDSGVQTTD 470
Query: 224 PCAGRRREKTLLVVQNVVD 280
PC ++ + +V +++D
Sbjct: 471 PCT--TNKEVVPLVTSIID 487
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 55 GASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE 219
G S +L + + G L+ G +W R GR T LGW + T+E
Sbjct: 690 GFFHASSSSLIAGANGGSDGGGGARTLSWGTWWRRLGRLAPTVALGWCGRWSTRE 744
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 244 APASSARVIPLYAASFTTLASW*GVIFPVGANIILPPDT*SHCHTVA 104
APA S+ + P+ AAS + A++ P A +I PP + T A
Sbjct: 507 APAPSSVISPVLAASASAAAAFAPAPAPAAAEVIPPPPLPAAASTAA 553
>05_04_0211 +
19088656-19088965,19089911-19089987,19090964-19091047,
19091130-19091243,19091861-19091947,19092000-19092107,
19092643-19092710,19093044-19093131,19093225-19093298,
19093454-19093817,19094024-19094070,19094154-19094235,
19095698-19095817
Length = 540
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +2
Query: 197 EGSSVQRNDPCAGRRREKTLLVVQNVVDFPDGQLVAILGALEALYVPLQMRERDSTEE 370
+ V N PC+ ++ E + ++ D DG+++ I+ + LQ D T+E
Sbjct: 410 QSRQVNGNKPCSMQQNEMPYAMSRSSEDIDDGEVIGIITLEDVFEELLQEEIVDETDE 467
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 97 WMCLSSFPIPSTKLPICLGNGTLSSSG 17
W+C F +P +LP+ +GT SSSG
Sbjct: 122 WLC---FNLPGDELPLKFSSGTASSSG 145
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 259 SRSKRRRLSGRTVGSDPRSPRSVVRAPSDARERQHXGTFQESVSTPK 399
S S+RRR G G + + V P A E + F ESV T K
Sbjct: 267 SPSRRRRRKGGGGGEEAEAASPSVSVPLPAAEAEPLVAFLESVRTSK 313
>02_03_0243 - 16791789-16793306
Length = 505
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 173 SLPRR*G--GEGSSVQRNDPCAGRRREKTLLVVQ--NVVDFPDGQLVA 304
SL RR G G G + + P GRRR+ + ++ ++ P+G+LVA
Sbjct: 442 SLCRRSGWRGSGGASAKTSPSRGRRRDPVISGIEYMSIAGPPNGRLVA 489
>04_04_1606 - 34741814-34742684,34742763-34743088
Length = 398
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 272 VVDFPDGQLVAILGALEALYV 334
VVDF DG+LV ++ L+ L+V
Sbjct: 352 VVDFDDGELVGVVRFLDVLWV 372
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 27.1 bits (57), Expect = 6.1
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 215 RNDPCAGRRREKTLLVVQNVVDFPDGQLVAILGALEALYVPLQMRERDSTEELFKNRSPR 394
R + A R ++ L+ Q+ + PD V+ + L+ L RDS +++ KN R
Sbjct: 837 RREGLALSRPTESQLLFQDAIKCPDDNDVSFYKQVRRLHTILT--SRDSMDDVPKNPEAR 894
Query: 395 RRKT 406
RR T
Sbjct: 895 RRIT 898
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 194 GEGSSVQRNDPCAGRRREKTLLVVQNVVDFPDGQLVAILGALEALYVP 337
GE S+ R DP + +R + + NV + P+G V I+ L+ VP
Sbjct: 23 GEWSTKSRTDPDSRIKRRRGPTKLANVENLPEG--VKIIDKLDRFNVP 68
>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 LVVQNVVDFPDGQ-LVAILGALEALYVPLQMRERDSTEE 370
L+ Q +D P L+A G LEAL L + +D+TEE
Sbjct: 1207 LLTQLAIDCPPNMMLMAEAGILEALTKYLSLSPQDATEE 1245
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 30 NVPLPRHIGSFVDGIGKLDKHIHKSATVWQCDYVSGGRIILAPTGKITPYHDARVVKEA 206
++P+ + S ++ + + D+ T+ D GR+I A G + HD RV+ EA
Sbjct: 484 HIPVTVGVDSAIEHMNRHDETTKNVLTIVGFD----GRVIFADAGWLGSVHDNRVLNEA 538
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,111
Number of Sequences: 37544
Number of extensions: 263678
Number of successful extensions: 817
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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