Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20257
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_22061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.1  
SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)            28   3.6  
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)                 27   4.8  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   27   4.8  
SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)                      27   4.8  
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_34989| Best HMM Match : Tropomyosin (HMM E-Value=3.2)               27   6.3  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   8.3  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 16  TPRNLTCHCRDISGASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTT 183
           TPR  +         S+T +    + STS  R G+ TT  A     PR G +  T+
Sbjct: 41  TPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTS 96


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 4/138 (2%)
 Frame = +1

Query: 16  TPRNLTCHCRDISGASSTESGNLTSTS-TSRRRCGNATTYLAAGLYWPRPGRSLLTTTLG 192
           T RN++      S  S     N+  TS TSR+  GN+ T  A  L      R L T+T  
Sbjct: 141 THRNISETGLRTSATSRKTFSNIRPTSETSRKTSGNSGTTTAVSLTISVSSRKLPTSTRT 200

Query: 193 W*RK---QRTKE*PVRWTPARKDLTSRSKRRRLSGRTVGSDPRSPRSVVRAPSDARERQH 363
           + +     R+   P R  P  +  TS      L+      +P    S  +A +     + 
Sbjct: 201 YIKSSEASRSSLIPSRTMPTNRLTTSNMLSTLLTTTARLDEPTRMPSTTKATTKRYPTKR 260

Query: 364 XGTFQESVSTPKKNQLRT 417
             T + S   P +  + T
Sbjct: 261 PTTKRHSTRLPTRKMMLT 278


>SB_22061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 32  RAIAETYRELRRRNRET*QAHPQVGDGVAMRLRIWRQDYIGPDREDHSLPRR*GGEGSSV 211
           +AI E+ +EL+ + +ET  + P +    +  L       +GP + D + P+    E S+V
Sbjct: 540 KAIEESIQELKTQQKETLASKPVIDAHSSSPLAAMTVPEMGPPKSDLAFPKPQSSEASAV 599


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 199 RKQRTKE*PVRWTPARKDLTSRSKRRRLSGR--TVGSDPRSPRSVVRAPSDARERQHXGT 372
           R+ R++    R T AR   +   ++ R  GR   V ++   P +  R+P  +R+ +    
Sbjct: 146 RRSRSRSPARRRTAARSSPSPPKRQGRSPGRPSNVTAEKNEPETPKRSPVRSRKAKEEKV 205

Query: 373 FQESVSTPKK 402
            +E   +PKK
Sbjct: 206 SEEKTPSPKK 215


>SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)
          Length = 235

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 268 KRRRLSGRTVGSDPRSPRSVVRAPSD-ARERQHXGTFQESVSTPKK 402
           K RR   R    + RSP  + R P+D  RE  H  T +  +ST K+
Sbjct: 95  KDRRKGSRYDAFEERSPLDLTRDPADNMRELLHNITSKNEMSTTKR 140


>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
          Length = 288

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +1

Query: 226 VRWTPARKDLTSRSKRRRLSGRTVGSDPRS-PRSVVRAPSDARERQHXG----TF--QES 384
           VR T     LTS     R + +     PR  PR +V+ P   R R H      TF  Q +
Sbjct: 124 VRLTSIHSLLTSSRSSTRATQQAPTPSPRQIPRPLVQNPVQTRPRYHRSESTPTFLVQRT 183

Query: 385 VSTPKKN 405
           V TP +N
Sbjct: 184 VPTPTEN 190


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  TSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW 195
           T+T + R GNA  Y+   L    PG  LL T  G+
Sbjct: 568 TATYQARAGNAKVYVDGELKARGPGNGLLDTDWGY 602


>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
          Length = 653

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 212 VRCFLHHPSVVVRSDLPGRGQYNPAARYV 126
           +R  L  PSV +R+ L   G Y+   RYV
Sbjct: 447 IRALLQSPSVCIRALLQSLGTYSSITRYV 475


>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +1

Query: 226 VRWTPARKDLTSRSKRRRLSGRTVGSDPRS-PRSVVRAPSDARERQHXG----TF--QES 384
           VR T     LTS     R + +     PR  PR +V+ P   R R H      TF  Q +
Sbjct: 124 VRLTSIHSLLTSSRSSTRATQQAPTPSPRQIPRPLVQNPVQTRPRYHRSESTPTFLVQRT 183

Query: 385 VSTPKKN 405
           V TP +N
Sbjct: 184 VPTPTEN 190


>SB_34989| Best HMM Match : Tropomyosin (HMM E-Value=3.2)
          Length = 314

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 LYVPLQMRERDSTEELFKNRSPRRRKTN*EL 418
           L+VPL + E DSTE++ K  + R  +   +L
Sbjct: 210 LFVPLTITENDSTEDIAKELADRLEEAKTDL 240


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 190 GW*RKQRTKE*PVRWTPARKDLTSRSKRRRLSGRTVGSDPRSPRSVVRAPSDARER 357
           GW R+ R +    R    R+   SR +RRR   R      R  R  VRA    R+R
Sbjct: 676 GWRRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRKRQR 731


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 191 PSVVVRSDLPGRGQYNPAARYVVALPHRRRLVDVLV 84
           P  V+ S+ P +   N   +    LPH RR+V V+V
Sbjct: 251 PEFVMISEDPNKSIVNITPKKAGQLPHGRRMVSVIV 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,431
Number of Sequences: 59808
Number of extensions: 269017
Number of successful extensions: 800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)