Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20257
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    41   4e-04
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    30   0.77 
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   1.4  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   1.4  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical...    28   3.1  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z79603-8|CAH04750.1|  137|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    26   9.5  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    26   9.5  

>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 51  IGSFVDGIGKLDKHIHKSATVWQCD--YVSGGRIILAPTGKIT-PYHDARVVKEAAYKGM 221
           I   V+   KL      S ++ Q D   V  GR+IL+ TG ++  Y D R  + AA KG+
Sbjct: 46  IAPAVNNFLKLHSGAFNSTSLVQVDSSVVPSGRLILSGTGNVSRDYDDVRRYQAAARKGI 105

Query: 222 TRALDAGAKRP 254
           + AL AG K P
Sbjct: 106 SMALSAGVKSP 116



 Score = 37.1 bits (82), Expect = 0.005
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 281 FPDGQLVAILGALEALYVPLQMRERDSTEEL 373
           FP+ +LVA LGAL  +Y PL +RE ++ ++L
Sbjct: 126 FPNAELVAALGALTPVYTPLNVREEENKQKL 156


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +1

Query: 73  SGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE*PVRWTPA-RK 249
           S  L +   SRR+  + +T L+   Y     RSL  +     R+ R        TPA R 
Sbjct: 274 SSPLRAAEISRRKSTSHSTSLSKRRYLRSRSRSLSKSPAR--RRSRHLSRSGSRTPAQRH 331

Query: 250 DLTSRSKRRRLSGRTVGSDPRSP---RSVVRAPSDARER 357
              S S  RR SGR   S  RSP   R V R+ S +R R
Sbjct: 332 SRRSESTSRRRSGRHSRSRSRSPPRKRPVRRSRSRSRSR 370


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 202 KQRTKE*PVRWTPARKDLT-SRSKRRRLSGRTVGSDPRSPRSVVRAPSDAR 351
           K R++  P R     K  + SRS+ R    R   S  RSP+ V R+PS  R
Sbjct: 235 KSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPR 285


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 241 ARKDLTSRSKRRRLSGRTVGSDPRSPRSVVRAPSDARERQHXGTFQESVSTPKKNQLRT 417
           ++KD   + K+R  S     SD R  R   R+PS  R R+     ++   +P++ + R+
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRS 184


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 241 ARKDLTSRSKRRRLSGRTVGSDPRSPRSVVRAPSDARERQHXGTFQESVSTPKKNQLRT 417
           ++KD   + K+R  S     SD R  R   R+PS  R R+     ++   +P++ + R+
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRS 184


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 104 RLVDVLVKFPDSVDEAPDMSRQWHVKF 24
           RL+D +VK P+ VD+      +WH+ F
Sbjct: 137 RLLDEIVKNPEEVDDDVQEELRWHLLF 163


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical protein
            F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +1

Query: 58   ASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE*PVRWT 237
            +S+T S + TSTST+   CG+     A      R  RSL   T    R +R    PV  T
Sbjct: 976  SSTTSSNSPTSTSTTMTDCGSNPHLGAPNAGGHRRTRSLRERTGVEHRLERLSSGPVHRT 1035

Query: 238  P 240
            P
Sbjct: 1036 P 1036


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical protein
            F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +1

Query: 58   ASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE*PVRWT 237
            +S+T S + TSTST+   CG+     A      R  RSL   T    R +R    PV  T
Sbjct: 976  SSTTSSNSPTSTSTTMTDCGSNPHLGAPNAGGHRRTRSLRERTGVEHRLERLSSGPVHRT 1035

Query: 238  P 240
            P
Sbjct: 1036 P 1036


>AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical
           protein Y87G2A.10 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -2

Query: 388 RPILEKFLXAVSLSHLKGHVQRF*GSEDRYQLSVRKVDDVLND**GLFAPASSARVIPLY 209
           RPI  K      L H+   V++F    D  +L+ R VDD+      L+   ++   +P+ 
Sbjct: 100 RPITVKDDQGNVLKHIASIVEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPID 159

Query: 208 AASFTTLASW 179
           A   T +  W
Sbjct: 160 AIVTTKVKKW 169


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 152 QYNPAARYVVALPHRRRLVDVLV-KFPDSVDEAPDMSRQWH 33
           QYNP A     +  R+RL+D++   FP    ++  +   WH
Sbjct: 150 QYNPIAHPDRTIEFRQRLLDLMTSSFPKKSIKSKSLVIHWH 190


>Z79603-8|CAH04750.1|  137|Caenorhabditis elegans Hypothetical
           protein M163.8 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 40  CRDISGASSTESGNLTSTSTSRRRCGNATTYLAA 141
           CR  SGASST S + +S+S++   CG++ +  A+
Sbjct: 55  CRLCSGASSTTSSSASSSSST---CGDSNSNCAS 85


>Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.1 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 176 RSDLPGRGQYNPAARYVVALPH 111
           R D+  RGQ+ P    VV LPH
Sbjct: 384 REDITIRGQFYPKGAIVVCLPH 405


>L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical
           protein K12H4.7a protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 25  NLTCHCRDISGASSTESGNLTS 90
           N T HC D+ GASS +S  LT+
Sbjct: 473 NGTAHCADMYGASSLDSMYLTN 494


>L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical
           protein K12H4.7b protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 25  NLTCHCRDISGASSTESGNLTS 90
           N T HC D+ GASS +S  LT+
Sbjct: 436 NGTAHCADMYGASSLDSMYLTN 457


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 206 SVQRNDPCAGRRREKTLLVVQNVVDFPDGQLVA 304
           S  RN P  GRR E T + ++  ++    ++VA
Sbjct: 555 STARNGPSTGRRTESTAIEIEQPIEAVPPEVVA 587


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 194  HPSVVVRSDLPGRGQYNPAARYVVALPHRRRLVDVLVKFPDSVDEAP 54
            HP  + RS + GRG +    R  V  P+   L +V  K  + VD  P
Sbjct: 1692 HPDQLKRSRMLGRGAFGFVFRATVRQPN-GELCEVAQKMLEPVDPGP 1737


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 194  HPSVVVRSDLPGRGQYNPAARYVVALPHRRRLVDVLVKFPDSVDEAP 54
            HP  + RS + GRG +    R  V  P+   L +V  K  + VD  P
Sbjct: 1690 HPDQLKRSRMLGRGAFGFVFRATVRQPN-GELCEVAQKMLEPVDPGP 1735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,601,245
Number of Sequences: 27780
Number of extensions: 192780
Number of successful extensions: 591
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)