Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20256
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    30   0.010
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   4.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   4.5  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 0.010
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 278 NKLYNLPRG-FGSFPVLEILDLTYNNLNE 361
           NKL N  +  FG+ P L++LDL++N+L E
Sbjct: 258 NKLLNATKDLFGNMPHLQVLDLSHNSLYE 286



 Score = 27.9 bits (59), Expect = 0.052
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
 Frame = +2

Query: 263 LNVSLNKLYNL----------PRGFGSFPVLEILDLTYNNLNEKVLPGNFF--IMDRLRA 406
           +N+S NKL NL            G G    +++LDL++NN+    +   FF  +   L  
Sbjct: 195 VNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS--VAKQFFRPVELSLMQ 252

Query: 407 LYLGDNDL 430
           LYLG N L
Sbjct: 253 LYLGHNKL 260



 Score = 25.4 bits (53), Expect = 0.28
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 263 LNVSLNKLYNLP-RGFGSFPVLEILDLTYNNLN 358
           LN+  NK+  +    F + P LE LDL YN+++
Sbjct: 145 LNLKGNKIATIAYETFQNLPELEDLDLAYNSIS 177



 Score = 23.8 bits (49), Expect = 0.85
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 254 VRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 361
           +RI++ S N+L +LP        LE LD+++N L +
Sbjct: 322 LRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGK 357


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 375 PGNTFSFKLLYVRSNISSTGKEPKPLGKLYSLFNETLRILT 253
           P   F   L+Y  + I++   + +PL +L+ +  +  R +T
Sbjct: 45  PALQFCTHLIYGYAGINAETFKAQPLNELFDVTRDNYRHIT 85


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 262 PQCFIKQTV*LAKRLWFLPC 321
           P C+I   + L    WF+ C
Sbjct: 217 PYCYINCLIYLIGGFWFMQC 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,701
Number of Sequences: 336
Number of extensions: 1877
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)