Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20256
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    36   0.004
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.28 
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    29   0.50 
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   1.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   1.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   2.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.1  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    25   8.1  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +2

Query: 233 QLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALY 412
           +++  T++R LN+  N L   P        LEILD++ N +  K LP +F  +  L+ L 
Sbjct: 70  EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI--KQLPESFGALMNLKVLS 127

Query: 413 LGDNDL 430
           +  N L
Sbjct: 128 ISKNRL 133



 Score = 34.7 bits (76), Expect = 0.008
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +2

Query: 254 VRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
           + IL++S NK+  LP  FG+   L++L ++ N L E  LP     M  L  L + +N +
Sbjct: 100 LEILDISRNKIKQLPESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENNHI 156


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 170 SQLEQLRNSKLGQ*QHSRASSQLIITTQVRILNVSLNKLYN-LPRGFGSFPVLEILDLTY 346
           ++L QL          S+ SS++    +++ L +  N L N LP+  G    LE +DL+Y
Sbjct: 545 TELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSY 604

Query: 347 N 349
           N
Sbjct: 605 N 605



 Score = 29.1 bits (62), Expect = 0.38
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNN 352
           LN++ NKL+ LP        L  LDL+YNN
Sbjct: 507 LNIANNKLFFLPHSTRYLVNLTYLDLSYNN 536


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 236 LIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 376
           LI  T V+    S  KL+++ + FG F VLE +   Y  L E+ + G
Sbjct: 69  LIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 148 ILLWLRDXRVMFSXENKPGISSXLDIPLSTKSI 50
           IL W+   + MFS +  P ++S L +P   K I
Sbjct: 89  ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 438 LPPEIGNLKNLQIL 479
           LPPEIG LKNL IL
Sbjct: 196 LPPEIGKLKNLVIL 209


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 285 SLFNETLRILTWVVMIS*LEALECCYWPSLEFLSCSSWLVQ-QALQRFCC 139
           S FN   + L W++  S  +++ CC +    +    S++ +  AL   CC
Sbjct: 188 SFFNYIFQNLGWLIRFSFRKSIICCLFTPFSYAILRSYIWRFAALLTSCC 237


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 417 PKYKARSLSIIKKFPGNTFSFKLLYVRSNISSTGKE 310
           PKY    ++++++ PG  FS  L  +R + S+  KE
Sbjct: 426 PKYAGHVVAVLQRAPGQVFSGTLGILRPS-SAANKE 460


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 330 ISSTGKEPKPLGKLYSLFNETL 265
           I STG++PK LGK Y    E +
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,934
Number of Sequences: 5004
Number of extensions: 30982
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)