Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20256
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 40 0.001
SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) 36 0.024
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 35 0.031
SB_22127| Best HMM Match : LRR_1 (HMM E-Value=1.1e-08) 34 0.055
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34) 33 0.13
SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19) 33 0.13
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27) 33 0.13
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19) 31 0.39
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 31 0.67
SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14) 31 0.67
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 30 0.89
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8) 28 3.6
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 28 4.7
SB_8473| Best HMM Match : Transgly (HMM E-Value=2e-19) 28 4.7
SB_19790| Best HMM Match : LRR_1 (HMM E-Value=0.00028) 28 4.7
SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16) 27 6.3
SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55) 27 6.3
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10) 27 8.3
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +2
Query: 230 SQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRAL 409
S+L T + IL++ N+L +LP G P L++++L N L + LP +F + L+AL
Sbjct: 519 SELGSCTAMTILSLRDNRLVHLPDSIGRMPKLQVINLASNRL--EYLPYSFHKLVSLKAL 576
Query: 410 YLGDN 424
+L +N
Sbjct: 577 WLSEN 581
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +2
Query: 170 SQLEQLRNSKLGQ*QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYN 349
S L+QL+ +L + R + +R L+ N L +LP GS LE+L+LT+N
Sbjct: 452 SDLKQLQKLRLTDNKLRRLPDTIGRLHNLRFLHCDYNVLESLPDQMGSLTELEVLELTHN 511
Query: 350 NLNEKVLPGNFFIMDRLRALYLGDNDL 430
L + L + ++++L+ L N L
Sbjct: 512 KLEK--LSASLGLLNKLKCLKFAKNRL 536
>SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)
Length = 272
Score = 35.5 bits (78), Expect = 0.024
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 173 QLEQLRNSKLGQ*QHSRASS---QLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLT 343
QL+ L ++++ ++R +S L +++L+V+ NKL +LP+ G L+ LD+
Sbjct: 59 QLKDLADARILVLSNNRLTSLPADLDELRSLQVLDVANNKLKSLPKAIGGLSSLQTLDVQ 118
Query: 344 YNNLNEKVLPGNFFIMDRLRALYLGDN 424
NNL LP + LR+L + +N
Sbjct: 119 GNNLQS--LPLEIGNLKLLRSLNVSNN 143
Score = 30.3 bits (65), Expect = 0.89
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 221 RASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRL 400
+ QL RIL +S N+L +LP L++LD+ N L K LP + L
Sbjct: 55 KGGGQLKDLADARILVLSNNRLTSLPADLDELRSLQVLDVANNKL--KSLPKAIGGLSSL 112
Query: 401 RALYLGDNDL 430
+ L + N+L
Sbjct: 113 QTLDVQGNNL 122
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 35.1 bits (77), Expect = 0.031
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 248 TQVRILNVSLNKLYNLPRGFGS-FPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDN 424
+++R+LN++ NKL L FG+ L L + N+L+E L +F +M L+ L LGDN
Sbjct: 109 SKLRVLNLTGNKLEKLRDDFGAGLASLTELRIDENDLSE--LSVSFTLMKNLKVLELGDN 166
Query: 425 DL 430
+
Sbjct: 167 HI 168
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/85 (23%), Positives = 42/85 (49%)
Frame = +2
Query: 176 LEQLRNSKLGQ*QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 355
L L ++ + S S + +++L + N + LP FG+ LE+++L+ NN+
Sbjct: 132 LASLTELRIDENDLSELSVSFTLMKNLKVLELGDNHIERLPEDFGNLRKLEVVNLSQNNI 191
Query: 356 NEKVLPGNFFIMDRLRALYLGDNDL 430
+ LP +F + L++ + N +
Sbjct: 192 EK--LPESFGFLCCLKSFDITGNHI 214
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
L + N+L +LP F + ++ LDL N L+E +P ++ L L L N L
Sbjct: 408 LRLDSNQLSSLPASFANLTNVKTLDLYRNKLSE--IPRVLLKLENLMRLDLDGNKL 461
>SB_22127| Best HMM Match : LRR_1 (HMM E-Value=1.1e-08)
Length = 175
Score = 34.3 bits (75), Expect = 0.055
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 429 FEXLPPEIGNLKNLQILSMR 488
FE +PPEIG LKNLQ+L R
Sbjct: 49 FEMIPPEIGQLKNLQVLVFR 68
>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
Length = 409
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = +2
Query: 170 SQLEQLRNSKLGQ*QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYN 349
++LE+L+ L + +Q+ + ILN+S N + +L L L+L N
Sbjct: 216 TKLEKLQVLYLQENALDSVPAQVYGIQSLEILNISSNNITSLSDEIRLLRNLVELNLNKN 275
Query: 350 NLNEKVLPGNFFIMDRLRALYLGDNDL 430
N+ E LP +F ++ L+ L+ N+L
Sbjct: 276 NIQE--LPYDFHLLKNLKTLFFSANNL 300
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 361
L++S NK+ LP+ G LEIL N L+E
Sbjct: 342 LDISSNKITALPKSIGKMERLEILRAESNPLDE 374
>SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19)
Length = 261
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 263 LNVSLNKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
L S N++ NL R F +P L+ L + NN E + G F L LYLG N L
Sbjct: 65 LRASYNRITNLTRSSFAGYPYLKWLSVE-NNFMEVIENGTFLRQALLDELYLGYNKL 120
>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
Length = 309
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 233 QLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 355
+L+ +++R L + N+L LP GFG L++L L++NNL
Sbjct: 86 ELVYLSRLRELCLDHNQLTLLPSGFGRLTNLKVLCLSHNNL 126
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 278 NKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
N L LP+ FGS LE L+L+ N L E P + F + +L+ L LG N +
Sbjct: 95 NNLDELPKEFGSLAKLEKLNLSGNRL-ESFGP-SIFRLTQLKVLLLGGNKI 143
>SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 254 VRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
+R L+VS NKL +LP G L L L+ N L +VLP + +L+ L L N L
Sbjct: 76 LRHLDVSSNKLRSLPAEMGDLVTLRELLLSNNGL--RVLPNELGKLFQLQTLGLSGNPL 132
>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
Length = 811
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 323 LEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
L +DL+ N+L+ LP FF + +L+ LYL D L
Sbjct: 77 LSDIDLSSNDLSLNGLPNEFFQLPKLKQLYLNDCQL 112
>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 30.7 bits (66), Expect = 0.67
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYL 415
L ++ NKL ++P FG F LE L+++ N + +V+P + RL+ LYL
Sbjct: 97 LGLAHNKLNDVPLYFGKFRQLEWLNISGNAI--EVVPVFLLRIPRLKYLYL 145
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 30.7 bits (66), Expect = 0.67
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDN 424
L+++ NKL ++P G + L L+L NN++ V+P + M L+ L+L +N
Sbjct: 550 LDLNNNKLTSIPAGITNLTKLTNLNLENNNIS--VVPKYVWQMGCLKVLFLSNN 601
>SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14)
Length = 384
Score = 30.7 bits (66), Expect = 0.67
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
L ++ NKL LP F L+ LDL++N L LP N +M+ L ++ + N+L
Sbjct: 112 LFINNNKLRELPDTFCYLARLQKLDLSHNQLLH--LPENIGLMESLLSINVSYNEL 165
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 212 QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 355
Q S+ + + +L +S N L LPRG G+ L +LD+ N L
Sbjct: 736 QISKLPEDIQWLVNLEVLILSNNLLKKLPRGIGALRKLRVLDIEENKL 783
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
LNV+ N++ LP LE+L L+ NNL +K LP + +LR L + +N L
Sbjct: 730 LNVATNQISKLPEDIQWLVNLEVLILS-NNLLKK-LPRGIGALRKLRVLDIEENKL 783
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDN 424
LNV N+L +LP FGS+ L L++ N +++ LP + + L L L +N
Sbjct: 707 LNVKDNQLTSLPLDFGSWISLVELNVATNQISK--LPEDIQWLVNLEVLILSNN 758
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 30.3 bits (65), Expect = 0.89
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 215 HSRASSQLIITTQVRILNVSLNKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFFI- 388
HS A L T +R LN+ N+L LPR F L LDL+ N L+ LP + F
Sbjct: 84 HSNAFRNL---TALRSLNLGANRLSVLPRSVFRDLASLRSLDLSANRLSS--LPEDTFEG 138
Query: 389 MDRLRALYLGDNDL 430
+ L+ L+L N L
Sbjct: 139 LSSLQDLFLDFNRL 152
>SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 212 QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNL 355
Q S+ + + +L +S N L LPRG G+ L +LD+ N L
Sbjct: 311 QISKLPEDIQWLVNLEVLILSNNLLKKLPRGIGALRKLRVLDIEENKL 358
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDNDL 430
LNV+ N++ LP LE+L L+ NNL +K LP + +LR L + +N L
Sbjct: 305 LNVATNQISKLPEDIQWLVNLEVLILS-NNLLKK-LPRGIGALRKLRVLDIEENKL 358
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGDN 424
LNV N+L +LP FGS+ L L++ N +++ LP + + L L L +N
Sbjct: 282 LNVKDNQLTSLPLDFGSWISLVELNVATNQISK--LPEDIQWLVNLEVLILSNN 333
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 233 QLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALY 412
Q++ TQ+++LN+S N + N P F F + + +L N + LP + +L L
Sbjct: 70 QILELTQLQVLNLSGNHITNFPYRF--FMLRFLTELYLRNDFLEFLPAQVCTLVQLEVLD 127
Query: 413 LGDN 424
L +N
Sbjct: 128 LANN 131
>SB_26790| Best HMM Match : DUF262 (HMM E-Value=4.8)
Length = 525
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 164 CTSQLEQLRNSKLGQ*QHSRASSQLIITTQVRILNVSLNKLYNL 295
CT+ + L + Q +++ + ++TT +R +N+ +NK+YNL
Sbjct: 462 CTAVINWLLCKDMSQ-DFTKSYTWELMTTTIRRMNMQVNKVYNL 504
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +2
Query: 200 LGQ*QHSRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGN 379
LG+ S + T +++L V+ N L +LP G S L L L+ N L E +P
Sbjct: 428 LGEEDTDLGSQGWMRCTSLKVLKVTHNLLESLPFGIQSASSLVKLFLSNNKLKEFPMP-- 485
Query: 380 FFIMDRLRALYLGD 421
+ L A Y GD
Sbjct: 486 -WKCPLLTAKYQGD 498
>SB_8473| Best HMM Match : Transgly (HMM E-Value=2e-19)
Length = 318
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 345 YVRSNISSTGKE-PKPLGKLYSLFNETLRI 259
Y+R + KE PKP GKLY ++ + L+I
Sbjct: 162 YLRGYLKQWVKEHPKPDGKLYDIYRDGLKI 191
>SB_19790| Best HMM Match : LRR_1 (HMM E-Value=0.00028)
Length = 74
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 263 LNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 361
L++S NK+ LP+ G LEIL N L+E
Sbjct: 7 LDISSNKITALPKSIGKMERLEILRAESNPLDE 39
>SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16)
Length = 288
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 248 TQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYN 349
T + LN+S NK+ + P LE LDL++N
Sbjct: 80 THLTNLNLSHNKIVVIDESLRLLPALESLDLSFN 113
>SB_29723| Best HMM Match : EGF_2 (HMM E-Value=0.55)
Length = 319
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 218 SRASSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNN 352
+R +L + + + + +L+ +++ P+ FPV+ DL YNN
Sbjct: 90 ARLYRRLKLLVYLSLSSTTLHGVFSPPQPTAEFPVILFSDLNYNN 134
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 227 SSQLIITTQVRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRA 406
S+ ++ ++ L++ NKL +P G L+ LDL+ N L + LP + L+
Sbjct: 387 SNSIVDLDRLCRLDLQKNKLRKIPSGLLKMTCLKYLDLSDNELTD--LPRKEW-SPVLKT 443
Query: 407 LYLGDN 424
LYL N
Sbjct: 444 LYLSGN 449
>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
Length = 658
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 TTQVRILNVSLNKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFFIMDRLRALYLGD 421
T + L V+ + + + G F F L L LT+NN++ + F +++L L + D
Sbjct: 67 TENITELTVASSNISTITGGVFAGFTALRNLSLTFNNIH-TIRARGFAGLNKLEYLNMSD 125
Query: 422 N 424
N
Sbjct: 126 N 126
>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 193 ISKLLKLASAAGXTEILLWLRDXRVMFSXENKPGISSXLDIPLSTKSISGLFISL 29
IS + L A G L ++ M+S + KP + + + T+SI+GL I L
Sbjct: 394 ISIQIMLQEATGLISALGFIHLYHFMYSDKEKPFTDTSVLMNFFTRSITGLAIDL 448
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 238 YHHYPSKDPQCFIKQTV 288
YH PSK Q F+KQTV
Sbjct: 38 YHREPSKPGQAFMKQTV 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,272
Number of Sequences: 59808
Number of extensions: 198321
Number of successful extensions: 470
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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