Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20252
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.58 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.3  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.4  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   5.4  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   5.4  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   7.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.2  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   7.2  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   7.2  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   9.5  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   9.5  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 351 VHKLNRVFGEDKSELNWETIPDDVL 277
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 QLYNSVVVADYDSAVEKSKHLYEEKKS 187
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 367
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 VSQLSSDLSSPKTRLSLCTSATV 364
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 366  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQF 235
            E V  +H L+  F ED+ E   E I  DV  A++PKL   S  +
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKLDITSEDY 2042


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 283 CPWSPGAKVEGVLHAVHLVVSYQFV 209
           CPWS G  ++G+L  + + +S +FV
Sbjct: 52  CPWSIGNLLDGILSVLTIYIS-EFV 75


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 445 RVSWKLIALWENNKVYFKILEP 510
           R SW+   LW   K+Y K+L P
Sbjct: 308 RKSWETYPLWVQVKLYEKVLVP 329


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 489 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 355
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 223  KQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENA 336
            +++D+L  V L  +L+    +  DCF  + +++  ENA
Sbjct: 926  REEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEENA 963


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 292 PGRCPWSPGAKVEGVLHAVHLVVSYQFVHDI 200
           P + PW PG K+      V     Y+ +H+I
Sbjct: 70  PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 352 KRDGLALTLSNDVQGDDGRPAYGD 423
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 142 VVIGDDDAIVKLLLQNVVRDVGICSIQ 62
           VVIGD+  I K +L N V+    CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 98  LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 238
           LE  L +  +VA   S++EKSK LY+   K ++  +VV    R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,755
Number of Sequences: 5004
Number of extensions: 35240
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)