Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20252
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 31 0.44
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 31 0.77
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 29 1.8
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 29 2.3
12_01_0378 - 2946916-2947590 28 4.1
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 27 7.2
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 27 9.5
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 27 9.5
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 27 9.5
01_06_1485 + 37703696-37703815,37703970-37704044,37704598-377046... 27 9.5
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 27 9.5
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 286 RCPWSPGAKVEGVLHAVHLVVSYQFV 209
RC WSP + GV + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 310 TQLGNNPGRCPWSPGAKVEGVLHAVHLVVSYQF 212
T G P CP S AKVE HLV++Y++
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRW 443
>06_01_0605 +
4373697-4373872,4374840-4374876,4375296-4375399,
4375942-4376137,4376385-4376451,4376895-4376998,
4377090-4377174,4377309-4377369,4377694-4377825,
4377924-4377993,4379261-4379413,4379583-4379694,
4379779-4379920,4380023-4380140,4380862-4380957,
4381061-4381189
Length = 593
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 185 SEVITNVVNKLIRNN--KMNCMEYAFNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 355
SE I+++ N+L R+ K+ C N S A I S+L S LS+ TRL CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 396 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQFILLFRI 217
+L +IA S + K + + GE K W PDD +PK A + F LL +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372
Query: 216 SLFTTFVMTSLFFS 175
L++ F+ SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386
>12_01_0378 - 2946916-2947590
Length = 224
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 2 GLDSPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 142
G+ ++P +++L ASL AA++ VP + ++ +VV D+D
Sbjct: 87 GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +1
Query: 172 RGEEERSHHKCREQTDTKQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMY 351
R EEER+ + ++ K + E++ +LQ L + + + +E A + +KL Y
Sbjct: 455 RKEEERAAMEA-DRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFY 513
Query: 352 KRDGLALTLSNDVQGDDGRPAYGDG 426
R L + ++ G + DG
Sbjct: 514 NRSSRPLMHNTEIWMHGGYNNWSDG 538
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNK 232
DIL E LY S ++DY D ++L + + + N++ + ++NN+
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNR 285
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 397 DDGRPAYGD--GKDK--TSPRVSWKLIALWENNKVY 492
DDGR +G+ G ++ SP SW L +LW+ V+
Sbjct: 233 DDGRWRHGEWRGAERFLASPPASWALASLWDCGGVF 268
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 51 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 146
+W + +L +P ++ W + IASS +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111
>01_06_1485 +
37703696-37703815,37703970-37704044,37704598-37704699,
37704792-37704845,37705030-37705122,37705215-37705307,
37707150-37707254,37707356-37707454,37707558-37707899
Length = 360
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 RTRLSKDEARYSYSMSFRGISVC 69
R R S+DEARY + G+S C
Sbjct: 92 RGRFSEDEARYFFQQLICGVSYC 114
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = -2
Query: 441 ACLVLAVAVGRSA--IVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPD-DVLGA 271
A LV+ + G A I +LNI+ + +++ + +++K++R+FG W+ P+ + A
Sbjct: 512 AILVVDIMRGIQAQTIESLNILKRHKADFIIVLNKVDRLFG-------WKRCPNAPIKKA 564
Query: 270 LEPKLKAYSMQF 235
L+ + + M+F
Sbjct: 565 LKQQAEGVKMEF 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,181
Number of Sequences: 37544
Number of extensions: 236507
Number of successful extensions: 762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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