Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20252
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14) 29 3.2
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 27 7.3
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 27 7.3
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 158 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAFNFGSRAPRTSSGIVSQLSSDLSSPKTR 337
S+ L +EKK E ++ + + N K + + + NF + P S +L ++ +S +
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283
Query: 338 LSLCTSATVSL 370
L T VSL
Sbjct: 284 GRLITRCQVSL 294
>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
Length = 306
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +2
Query: 77 SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAF 256
S++ +++ + NS + + + + + +E +K E+ ++++ E++
Sbjct: 36 SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95
Query: 257 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 370
F + + T SG++ QL DL KTR SA + L
Sbjct: 96 KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132
>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 72 QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 203
+IPTS R SFTI P + VR R S +T RR +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 113 YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKL--IRNNKMNCMEYAFNFGSRAPRTS 286
++SV +DS+V + L+E KK +++ L + + N + SR P S
Sbjct: 910 FHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQESNASLKSNKSASRIPVRS 969
Query: 287 SGIVSQLSSDLSS---PKTRLSLCTS 355
+ S +S D S P +R+ + +S
Sbjct: 970 DSVKSSVSVDFKSKEPPASRIPVLSS 995
>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
Length = 1002
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Frame = +1
Query: 154 KEQAFIRGEEERSHHKCREQTDTK-------QQDELHGVRLQLW---LQGSKDIVRDCF 300
K Q R EEE K +E+ T+ + D+LHG+R+ W L G +++ F
Sbjct: 28 KLQEKARAEEEAKEKKRKEEDATRIAELEKPKPDKLHGLRVHCWVLVLSGKREVPESFF 86
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +2
Query: 77 SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAF 256
SDVP + Y + + D DSA + S KS + N V + C +
Sbjct: 42 SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101
Query: 257 NFGSRAPRTSSGIVSQLSSD 316
S+ P +S + + SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 179 KKSEVITNVVNKLIRNNKMNCMEYAFNFGSRAPRTSSGIVSQLSSD 316
K+ ++TN+ + I N++N + NF R S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +2
Query: 107 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAFNFGSRAPRTS 286
++YNS+ Y+S K + K + + N + + N + NC+ + N + S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384
Query: 287 S 289
S
Sbjct: 385 S 385
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +2
Query: 107 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAFNFGSRAPRTS 286
++YNS+ Y+S K + K + + N + + N + NC+ + N + S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477
Query: 287 S 289
S
Sbjct: 478 S 478
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,567
Number of Sequences: 59808
Number of extensions: 268462
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -