Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20252
         (538 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P...    30   1.7  
AY121690-1|AAM52017.1|  724|Drosophila melanogaster RE53177p pro...    29   5.3  
AE014298-2880|AAF48977.2|  713|Drosophila melanogaster CG14205-P...    29   5.3  

>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
            isoform H protein.
          Length = 8805

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 116  NSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAFNFG 265
            +SV + D+ + + K  +L   K + +I    +KL+ NN+   +++AF+ G
Sbjct: 4256 HSVQIRDFKTGLYKQLNLTHAKDTGIIDAQNSKLLYNNQTMTLKHAFDIG 4305


>AY121690-1|AAM52017.1|  724|Drosophila melanogaster RE53177p
           protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  AIVILCLFVASLYAADSDVPNDILEEQLY 115
           A++  CLF    YAAD+++P  I+EE  Y
Sbjct: 553 ALLFSCLFAVYGYAADAEIP-PIVEEAFY 580


>AE014298-2880|AAF48977.2|  713|Drosophila melanogaster CG14205-PA
           protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  AIVILCLFVASLYAADSDVPNDILEEQLY 115
           A++  CLF    YAAD+++P  I+EE  Y
Sbjct: 542 ALLFSCLFAVYGYAADAEIP-PIVEEAFY 569


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,488,303
Number of Sequences: 53049
Number of extensions: 391260
Number of successful extensions: 1733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2032955904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)