Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20252
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.92
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.92
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 29 1.6
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 28 4.9
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 4.9
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 28 4.9
Z77134-5|CAE17935.1| 94|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 8.6
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 8.6
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 27 8.6
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 27 8.6
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 8.6
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 27 8.6
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 27 8.6
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 172 RGEEERSHHKCREQTDTK---QQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFA 327
R EE+ K R QT T+ Q+ E+ L++ L+ S+D+ RDC ++ FA
Sbjct: 41 RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 260 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 367
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 388 VQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILEPDRNQYLVF 534
V+ D+G + K+ +S V L + N YFK+L+ D+ ++ +F
Sbjct: 1200 VRFDNGMTGFCPNKNISSSHVDNPLTRVKINQPYYFKVLKLDKERFSLF 1248
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 388 VQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILEPDRNQYLVF 534
V+ D+G + K+ +S V L + N YFK+L+ D+ ++ +F
Sbjct: 1200 VRFDNGMTGFCPNKNISSSHVDNPLTRVKINQPYYFKVLKLDKERFSLF 1248
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 272 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 367
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 388 VQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILEPDRNQYLVF 534
V+ D+G + K+ +S V L + N YFK+L+ D+ ++ +F
Sbjct: 1200 VRFDNGMTGFCPNKNISSSHVDNPLTRVKINQPYYFKVLKLDKERFSLF 1248
>Z77134-5|CAE17935.1| 94|Caenorhabditis elegans Hypothetical
protein R09H10.7 protein.
Length = 94
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 261 KLKAYSMQFILLFRISLFTTFVMT 190
KLK YS+ F +LF + L TT +++
Sbjct: 31 KLKMYSIMFFVLFILFLITTIIVS 54
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 108 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 206
SFT+ASS P T +R+++ S + + + + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 108 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 206
SFT+ASS P T +R+++ S + + + + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 234 ILLFRISLFTTFVMTSLFFSSYK 166
I LF +S FTT + L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 421 DGKDKTSPRVSWKLIALWENNKVYFKILEP 510
D KD+ +P VS KL+AL + NK FK P
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTP 148
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 421 DGKDKTSPRVSWKLIALWENNKVYFKILEP 510
D KD+ +P VS KL+AL + NK FK P
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTP 639
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
AL+H+ + E K + NWE PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
AL+H+ + E K + NWE PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
AL+H+ + E K + NWE PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
AL+H+ + E K + NWE PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 41 LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 190
LC F + DV EE+L + VAD+ V++ K +E+ E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,900,783
Number of Sequences: 27780
Number of extensions: 202098
Number of successful extensions: 730
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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