Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20252
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.12 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.64 
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    29   2.0  
At5g63450.1 68418.m07965 cytochrome P450, putative                     27   6.0  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   6.0  
At1g59077.1 68414.m06670 hypothetical protein                          27   6.0  
At1g58766.1 68414.m06659 hypothetical protein                          27   6.0  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   6.0  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    27   7.9  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.9  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 5   LDSPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 184
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 185 SEVITNV 205
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 275 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 367
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
            to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
            thaliana]
          Length = 1505

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 408  SAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQFIL 229
            S +++L I A R S+   L  +  R FG+D   ++W++I D  L +L   LK   +  +L
Sbjct: 1269 STLLSLCIQAPRSSKGGML--RSGRSFGKDSPAVHWQSIIDG-LNSLLVTLKENHVPLVL 1325

Query: 228  LFRI-SLFTTFVMTSLFFS 175
            + +I S   +++   LF S
Sbjct: 1326 IQKIYSQTFSYINVQLFNS 1344


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 424 GKDKTSPRVSWKLIALWENNKVYFKILEPDRNQ 522
           G+D TS  ++W    L +N+ V  KIL+  RN+
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNK 338


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 51   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 146
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 424 GKDKTSPRVSWKLIALWENNKVYFKILE 507
           G+D TS  ++W    L EN+ V  KILE
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE 331


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 115 VKLLLQNVVRDVGICSIQRCH 53
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,444,101
Number of Sequences: 28952
Number of extensions: 191010
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)