Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20249
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   1.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   1.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   3.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    20   7.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 263  WSTATSCGSATDRKLLESTSH*TLDSSWP 349
            W+T T+  + T R    ST+     ++WP
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTTNWP 1080


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  APNKMKLLVVFAMCMLAASA 79
           APN  +  VV+A C L A+A
Sbjct: 123 APNGHQTQVVYASCKLQAAA 142


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 292 CRPTACSSTPWCSSLVN 242
           C+P  C +   C  LVN
Sbjct: 226 CKPNPCQNGGTCHDLVN 242


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 248 KRRTPWSTATSCGSATDRK 304
           KR  P +  TSC   TD++
Sbjct: 63  KRVLPDALKTSCAKCTDKQ 81


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  PRTLLTKTSRRNCTTASSPATTTV 167
           PR++ T T     +T++SP T  +
Sbjct: 215 PRSVATPTGIPTPSTSASPPTVNI 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,615
Number of Sequences: 336
Number of extensions: 1641
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)