Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20249
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 1.0
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 29 1.0
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937 28 2.4
01_06_1618 - 38681729-38683989,38685577-38685796 28 3.1
04_04_0018 - 22178972-22179179,22179264-22179502 27 5.5
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 27 7.2
03_05_0760 - 27505860-27506148,27507647-27508580,27508677-275087... 27 7.2
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366... 26 9.5
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 26 9.5
11_06_0125 - 20356683-20357071,20359531-20362285 26 9.5
08_01_0188 - 1575000-1575062,1575192-1575263,1575371-1575466,157... 26 9.5
01_06_1747 + 39627938-39628441 26 9.5
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -1
Query: 258 VRLLSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSAD 94
V L+++ L+ W + P L + S L SP + SF S + S D
Sbjct: 33 VASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTD 92
Query: 93 SSTTPALAASMHIANTTR 40
++T P A+ +A TTR
Sbjct: 93 TATVPTTTAAARVAATTR 110
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 29.5 bits (63), Expect = 1.0
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = +2
Query: 38 LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 217
+LV + S ++ + A ++ ++ EKLYN + + + Y GK I
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255
Query: 218 QNVVNNLIIDKRRTPWSTATSCGSATDRKLLES 316
++ N + K WS A G A K +E+
Sbjct: 256 HSIFNGMPA-KDVVSWS-AMIAGYAESSKPMEA 286
>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
Length = 860
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 301 PVRCRPTACSSTPWCSSLVNDQVVNYIL-DDGXXXXXLIFQALTDSTVVVAGEDAVVQFL 125
P+R A S PW S D ++ ++ I+ + +A +DAV Q L
Sbjct: 69 PIRAHRPASPSEPWTFSWDEDSLLRHLQHSSSSPAMEFIYIGCLRDDIPLADQDAVAQAL 128
Query: 124 LE 119
LE
Sbjct: 129 LE 130
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 248 KRRTPWSTATSCGS 289
+RR PWS+++SCGS
Sbjct: 8 RRRRPWSSSSSCGS 21
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 51 LRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 179
L CAC+PP R + + + R +AS T L VR
Sbjct: 18 LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +2
Query: 122 EEKLY-----NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIID 247
EEKLY NS + YD +Q + ES+GK I+ + + D
Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453
>03_05_0760 -
27505860-27506148,27507647-27508580,27508677-27508792,
27508876-27508945,27509027-27509183
Length = 521
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 128 KLYNSILTGDYDSAVRQSLEY-ESQGKGSIIQNVVNNLIIDKRRTPWSTATSCGSATDRK 304
+++ L+ D+DS VR+ EY +SQ + S + + + TP S +S G + +
Sbjct: 235 EMHKKSLSTDHDSVVREITEYRQSQPRRSAELQGIAREAMSQCHTPLSIPSSRGKSESLE 294
Query: 305 LLESTSH*TLDS 340
L + L+S
Sbjct: 295 SLIRADNNALNS 306
>12_02_0587 +
20835741-20836115,20836183-20836218,20836409-20836617,
20837402-20837498,20837977-20838046,20838224-20838281,
20838914-20839734,20839780-20840121,20840224-20841227
Length = 1003
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 200 GKGSIIQNVVNNLII--DKRRTPWSTATSCGSATDRKLLES 316
G+GS I+ N+++ R WST T+ G KLL++
Sbjct: 366 GRGSRIELRDGNMVLLDFNSRLVWSTGTTSGQVRSAKLLDT 406
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 78 RASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARA 209
R SL++ R +L + R +C T +SP + + + + +RA
Sbjct: 134 RDSLDHKRNVLFRRDRDDCQTLTSPQASITFNDSSLTLTGPSRA 177
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 315 LSNNFLSVADPQLVAVLHGVRLLSM 241
L NNFLS + P L++ L G+++L +
Sbjct: 573 LQNNFLSGSVPSLLSQLKGLQILDL 597
>08_01_0188 -
1575000-1575062,1575192-1575263,1575371-1575466,
1575856-1575981,1576627-1576684,1577364-1577419,
1577881-1577958,1578051-1578155,1578242-1578347,
1578435-1578556
Length = 293
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 125 EKLYNSILTGDYDSAVRQSLEYESQG--KGSIIQNVVNNLIIDKRRTPWSTATSCGSATD 298
++ Y S L YD+ + Q L+Y +G GS+ + D+ PW +S + D
Sbjct: 105 DQYYLSKLEKAYDTVMMQQLQYRKKGVTYGSVQVSKDIKYADDQPIVPWGPRSSKSTVKD 164
Query: 299 RKL 307
++
Sbjct: 165 MRI 167
>01_06_1747 + 39627938-39628441
Length = 167
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 45 LYLRCACS-PPARASLNYPRTL---LTKTSRRNCTTASSPATTTVLSVRAWNMRAKARA 209
L L AC P R+ + +PR L R T+ PA + RAW A ARA
Sbjct: 8 LLLAAACQFTPFRSVVTHPRARRRRLPGGGMRRRATSRLPAPRSPAPRRAWEYSANARA 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,358,347
Number of Sequences: 37544
Number of extensions: 200098
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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