Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20249
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   1.1  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.4  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   3.2  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   4.3  
SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 27   5.6  
SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   26   9.8  

>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 232 QPDH*QETNTMEYCYKLWVGNG 297
           +P H   T+T++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 294 VADPQLVAVLHGVRLLSMIRLLTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRS 115
           +A P +   +   +LL     +  F  ++PL  L+YS+  RTA+   P    ++ +  R+
Sbjct: 164 IAAPYVAGWITNKKLLHDQIGVVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRN 222

Query: 114 WLEVSA 97
           W E  A
Sbjct: 223 WKEAGA 228


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 66   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 206
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 117 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 212
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   KAI*KAPNKMKLLVVFAMCMLAASAGVVELSADTSN 112
           KA  +AP K+   V  A CM  A+A  V  SADT+N
Sbjct: 40  KAAQQAP-KVLAAVSSASCMWTANAATVSPSADTAN 74


>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 794

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 312 SNNFLSVADPQLVAVLHGVRLLSMIRLLTTFWMMEPLPWL 193
           S+ FL       VA  +G +  S++R  +TF +  P+ WL
Sbjct: 5   SDQFLFAKSETRVANAYGCQQRSVVRAASTFRVKNPIIWL 44


>SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 RRTPWSTATSCGSATDRKLL 310
           R+  W+T  SCG ATD   L
Sbjct: 337 RKASWATTISCGKATDSMTL 356


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 TPWSTATSCGSATDRKLLES 316
           TP+  A +CGS  + KLL+S
Sbjct: 283 TPYQVALACGSTRNAKLLDS 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,425
Number of Sequences: 59808
Number of extensions: 220966
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)