Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20249
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.100
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 2.1
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 2.1
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 2.1
Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF038604-6|AAB92014.2| 243|Caenorhabditis elegans Hypothetical ... 27 5.0
AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical ... 27 6.5
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 26 8.7
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.100
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 57 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 212
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 115 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 225
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 115 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 225
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 115 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 225
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical
protein F01G10.10 protein.
Length = 562
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 369
W+ +GQEI R Y PL N + G Y++I+
Sbjct: 13 WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44
>Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical
protein F35E2.1 protein.
Length = 345
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 ETNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 360
E N + CY L NG E+VR + L NF I+ N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217
>Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical
protein F16D3.6 protein.
Length = 341
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 ETNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 360
E N + CY L NG E+VR + L NF I+ N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217
>AF038604-6|AAB92014.2| 243|Caenorhabditis elegans Hypothetical
protein B0546.5 protein.
Length = 243
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 250 ETNTMEYCYKLWVGNGQEIVRKYFPL--NFRLIMAGNYV 360
E N + CY L NG E+VR + L NF I+ N+V
Sbjct: 180 ENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFV 217
>AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical
protein C52E2.8 protein.
Length = 649
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 372 VNDLDIVSGHDESKV*WEVLSNNFLSVADP 283
++ L I SG+ KV W++L +NFLS A P
Sbjct: 293 LSGLQITSGN--YKVAWKILDHNFLSNARP 320
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
T16G12.1 protein.
Length = 1890
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 110 NQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNN 235
N DL++ + SIL+GDY ++ S+ + +++N
Sbjct: 1764 NLDLQKTMLRSILSGDYPPSLLNSIAVHDDSSDVLYNFLLDN 1805
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,463,252
Number of Sequences: 27780
Number of extensions: 161673
Number of successful extensions: 515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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