Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20249
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    35   0.017
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    35   0.017
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   0.65 
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    29   1.5  
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat...    28   2.0  
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat...    28   2.0  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   2.0  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   2.0  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   3.5  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    27   3.5  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    27   4.6  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    27   6.1  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    26   8.0  
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera...    26   8.0  
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam...    26   8.0  
At1g60640.1 68414.m06826 expressed protein                             26   8.0  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 89  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRT 259
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK RT
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 344

Query: 260 PWSTATSCG 286
             + + S G
Sbjct: 345 EQAGSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 89  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRT 259
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK RT
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 345

Query: 260 PWSTATSCG 286
             + + S G
Sbjct: 346 EQAGSFSRG 354


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 62  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 163
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 307 QFPVRCRPTACSSTPWCSSLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVAGEDAVVQF 128
           Q P+R      SS  WC    ND +   + D       +++    ++ V+ + ++ V QF
Sbjct: 58  QLPLRAHRDI-SSNKWCFEFDNDSLYLQLKDGFPPETEVVYVGSLNADVLPSEQEDVSQF 116

Query: 127 LLE 119
           LLE
Sbjct: 117 LLE 119


>At5g66720.2 68418.m08411 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 411

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125 EKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR-TPWSTA 274
           + LYN  +TG   S+VR  L  + +G    I  +     +DK+R +P++TA
Sbjct: 337 DNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQSPFATA 385


>At5g66720.1 68418.m08410 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 414

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125 EKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR-TPWSTA 274
           + LYN  +TG   S+VR  L  + +G    I  +     +DK+R +P++TA
Sbjct: 340 DNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQSPFATA 388


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 128 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 244
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 128 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 244
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 36  NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 140
           NFSL L+C   PP +    LN   +P TL+ K+    CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 265 EYCYKLWVGNGQEIVRKYFPLNF 333
           EY  KL + +G +   KYFPL F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 128 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRTPWSTATSCGSATDRKL 307
           K+Y  +L  +   AV++  ++ES G  +  Q  V  + +   R        C + T+R L
Sbjct: 303 KVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLL 362

Query: 308 L 310
           +
Sbjct: 363 V 363


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -3

Query: 313 F*QFPVRCRPTACSSTPWCSSLVNDQVVNYILDD--GXXXXXLIFQ-ALTDSTVVVAGED 143
           F  F  R  P + SS+P    L N    N  L+D  G      +F   LTD T  VA   
Sbjct: 509 FQNFSTRILPPSVSSSPSSVLLTNSNSPNGRLEDHHGGSGRCRLFGFPLTDETTAVASAT 568

Query: 142 AV 137
           AV
Sbjct: 569 AV 570


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  NFSLYLRCACSPPARASLN 92
           NF+L LRC  +PP ++ LN
Sbjct: 252 NFTLDLRCVLNPPQQSLLN 270



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  NFSLYLRCACSPPARASLN 92
           NF+L LRC  +PP ++ LN
Sbjct: 556 NFTLDLRCVLNPPPQSLLN 574


>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 484

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 137 NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRTPWSTATSCG 286
           N + TG+ +  + +  E  ++GKG II+     ++I   +      T CG
Sbjct: 326 NQVGTGENEDWLPKGFEERNKGKGLIIRGWAPQVLILDHKAIGGFVTHCG 375


>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
           protein similar to dTDP-glucose 4,6-dehydratase from
           Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
           Leptospira borgpetersenii GI:4234803; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 669

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 72  PARASLNYPRTLLTKTSRRNCTTASSPATTTVL 170
           P  + LN PR  +TK SR N    + P + TVL
Sbjct: 541 PISSDLNNPRNFITKISRYN-KVVNIPNSMTVL 572


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 167 AVRQSLEYESQGKGSIIQNVVNNLIIDKRRTPWSTATSCGSATDRKLLE 313
           A RQ    E QGKGS+ ++  N   +D   TP       G+++ R+ L+
Sbjct: 261 ARRQRKRLEKQGKGSLTKHGENE-EVDNPETPSQEKQIKGNSSSRRQLK 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,030,125
Number of Sequences: 28952
Number of extensions: 150505
Number of successful extensions: 485
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)