Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20247
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   2.4  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   2.4  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   3.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.3  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.7  
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    25   9.7  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   9.7  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   9.7  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 469 ENCVCLCVCASRNGI 513
           ENC CLCV   R GI
Sbjct: 228 ENCECLCVSCERMGI 242


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +3

Query: 93  QNVADGKTLFRPVRFASVERKQRRRSHHEHKDQRYVQQSVVEPH 224
           Q ++DG T  R   +A  E++++ R   E +++ +   + ++P+
Sbjct: 154 QTMSDGSTSSRYGFYADKEQRKKLREEFERRNRMFASSARIQPN 197


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 397 GQYSTSWDTVQDRRQHSSATCLLDLCFAENREALLART 284
           G+Y  SWD VQ+  + S    +  L  +  R+ LL  T
Sbjct: 41  GEYQRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRDT 78


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -2

Query: 499 KHTHTNTHSFRHNKSTTSEFRRRHEFICTHHQVSGQ 392
           +HTH N+    H  +   +   ++   C H  +S Q
Sbjct: 531 EHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQ 566


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 31  TSIELDGSTTQFSGNQQTRASKMLLTA 111
           T++    S ++FSG+  T+ASK L ++
Sbjct: 176 TAMSKSASASEFSGSSVTKASKKLTSS 202


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 199 CSRALSNLIFDICTGTLPVRIYRPKVCRRYVPREPL 306
           C    +  IF   T TLP+ I   K  RR+V  +PL
Sbjct: 15  CYEIPAMAIFLRSTITLPIAIASLKTARRFVQVQPL 50


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 451 SCSCYGENCVCLCVCASRNG 510
           S +  G++  CL  C+SRNG
Sbjct: 205 SWNVVGDSATCLLSCSSRNG 224


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 396 GSIRLAGTRCKTEGSTRRLPASWIFALQKTERLSWHV 286
           GSI  AG   + +G  +  P S   A +KT   SW+V
Sbjct: 256 GSISQAGPDGEYQGREQIAPVSDTEAARKTTSQSWYV 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,647
Number of Sequences: 5004
Number of extensions: 47761
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)