Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20247
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 31 0.80
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 30 1.1
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 1.8
10_04_0012 + 7555067-7555867 29 3.2
06_03_1347 - 29492460-29494685 28 4.3
07_01_0375 - 2790287-2790675,2790843-2793783 27 7.5
08_01_0183 - 1537906-1539141 27 9.9
06_01_0892 - 6827510-6827590,6829348-6830412 27 9.9
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 27 9.9
03_05_0591 + 25924907-25925518 27 9.9
02_03_0200 - 16282220-16282255,16283662-16284126,16284491-16284595 27 9.9
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 228 KYEVRQRSAAHISDPCVHGESVAFAFSQQKQNVQDEIKFCRQQHFGRSRLL 76
+Y + +A + S PC G SV S ++NV DE+K + + + ++L
Sbjct: 45 QYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKML 95
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 511 FHYGKHTHTNTHSFRHNKSTTSEFRRRHEFICTHHQV 401
FH+ K TNTH+ R +K +T ++H + H++
Sbjct: 537 FHFIKKEKTNTHTIRAHKPSTQTHPQKHHTSRSEHRL 573
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 230 TFAQERYRYGFTARKSVEGTCQESLSVFCKAKIQEAG 340
TF + +R+G A++++EG C E V CK +++ G
Sbjct: 1213 TFYEFLHRFGILAQEALEGNCDE--KVACKRILEKKG 1247
>10_04_0012 + 7555067-7555867
Length = 266
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -3
Query: 528 NDMFSNSITGSTHTQTHTVFAITRARLQNSGDVTSSFAHITKSPGSIRLAGTRCKTEGST 349
+DM ++ + + TV AR+ +G + + HI G IR G + GS
Sbjct: 56 DDMVASELWPNKEMAAKTVAMEATARVGENGQIRLPYGHIQSPLGQIRGVGWLRRGSGSG 115
Query: 348 RRLPA 334
PA
Sbjct: 116 EATPA 120
>06_03_1347 - 29492460-29494685
Length = 741
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 248 YRYGFTARKSVEGTCQESLSVFCKAKIQEAGSRRVLPSVLHRVPASRIL 394
Y + F + G Q L V + K EAG RVLP+ HR IL
Sbjct: 364 YTWLFDTWLAAMGGRQPDLLVTDQCKAMEAGIARVLPNTRHRFCQRNIL 412
>07_01_0375 - 2790287-2790675,2790843-2793783
Length = 1109
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 350 LVGYLPPGSLLCRKQRGSLGTYLRQTFGR*IRTGSVPVQMSNMR 219
L+G +PPG CR T + G + TGS+PV++S +R
Sbjct: 447 LIGNIPPGVKACR-------TLTQLQLGGNMLTGSLPVELSLLR 483
>08_01_0183 - 1537906-1539141
Length = 411
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 283 RYVPREPLCFLQSKDPGGR 339
RY PR C+L +KD GGR
Sbjct: 285 RYYPRRRPCWLPAKDLGGR 303
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 147 ERKQRRRSHHEHKDQRY 197
E+KQR + HH H+ Q Y
Sbjct: 363 EKKQRYQKHHHHRRQEY 379
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 236 AQERYRYGFTARK---SVEGTCQESLSVFCKAKIQEAGSRRVLPSVLHRVPASRILPGDL 406
+QER F++RK V C + V + + R + +H +PAS + PG +
Sbjct: 217 SQERTSRRFSSRKVSPKVPTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGI 276
Query: 407 V 409
V
Sbjct: 277 V 277
>03_05_0591 + 25924907-25925518
Length = 203
Score = 27.1 bits (57), Expect = 9.9
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 102 ADGKTLFRPVRFASVERKQRRRSH-HEHKDQRYVQQSVVEPHI*HLHRNATGTDLPPESL 278
AD + LF V R QRR ++ H + +RY+ V+ PH + G D P S+
Sbjct: 18 ADAEALFAWASDPRVVRFQRRDAYSHVDEARRYIVDKVL-PHPWYRAICVAGADRPVGSI 76
Query: 279 SKVRAKRASLFSAKQRSRRQVADECCLRS 365
S A L + + R + CC S
Sbjct: 77 SVKPADDLPLPEPESETGR-LRSGCCRAS 104
>02_03_0200 - 16282220-16282255,16283662-16284126,16284491-16284595
Length = 201
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 231 HLHRNATGTDLPPESLSKVRAKRASLFSAKQRSRRQVADEC 353
H H A + + E ++ RA + K+R RR V D+C
Sbjct: 155 HRHNQAVQSAVARERRRRISNGRAVATAGKRRQRRTVWDQC 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,855
Number of Sequences: 37544
Number of extensions: 329696
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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