Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20247
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.41 
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    25   1.2  
AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    25   1.3  
Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.7  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -3

Query: 228 KYEVRQRSAAHISDPCVHGESVAFAFSQQKQNV-----QDEIKFCRQQHFGRSRL-LVAR 67
           K +V++   AH  + C HG   A A+   K NV      D +K CR+ H     L +V R
Sbjct: 173 KQKVQRPKIAH-KNSCAHGYKYAVAYQILKDNVGYEIPVDTVKLCRENHIDTKVLNMVVR 231

Query: 66  EL 61
            L
Sbjct: 232 RL 233


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -3

Query: 228 KYEVRQRSAAHISDPCVHGESVAFAFSQQKQNV-----QDEIKFCRQQHFGRSRL-LVAR 67
           K +V++   AH  + C HG   A A+   K NV      D +K CR+ H     L +V R
Sbjct: 173 KQKVQRPKIAH-KNSCAHGYKYAVAYQILKDNVGYEIPVDTVKLCRENHIDTKVLNMVVR 231

Query: 66  EL 61
            L
Sbjct: 232 RL 233


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 25.4 bits (53), Expect(2) = 1.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 KSCSCYGENCVCLCVCASRNG 510
           ++  CY   C+C C  A++NG
Sbjct: 361 QNSGCYRGRCMCRCGFAAKNG 381



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 277 CRRYVPREPLCFLQSKDP 330
           C + VP   LCF+Q + P
Sbjct: 343 CMKAVPLNSLCFIQKQCP 360


>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 25.4 bits (53), Expect(2) = 1.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 KSCSCYGENCVCLCVCASRNG 510
           ++  CY   C+C C  A++NG
Sbjct: 224 QNSGCYRGRCMCRCGFAAKNG 244



 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 277 CRRYVPREPLCFLQSKDP 330
           C + VP   LCF+Q + P
Sbjct: 206 CMKAVPLNSLCFIQKQCP 223


>Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical
           protein F52D10.4 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 123 RPVRFASVERKQRRRSH 173
           RP +FA V RKQRR+S+
Sbjct: 121 RPFQFAPVHRKQRRKSY 137


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 135 FASVERKQRRRSHHEHKDQRYVQQSVV 215
           F   E+K+ RR+H + K +R  Q+S+V
Sbjct: 142 FTDQEKKRHRRTHDKKKKERNSQESMV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,228
Number of Sequences: 27780
Number of extensions: 285595
Number of successful extensions: 1027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)