Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20247
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              25   0.67 
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   2.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.7  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   6.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   8.2  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +2

Query: 452 RALVMAKTVCVCVCVLPVMEFEN 520
           + +++   +C+CV  L + +F+N
Sbjct: 2   KTILIISAICICVGALSIKDFQN 24


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 RALVMAKTVCVCVCVLPVMEFE 517
           +  V+   +CVCV  L + EF+
Sbjct: 2   KTFVIISAICVCVGALTLEEFQ 23


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  NQYRTRRKHHSVLWQPADESVQNVADGK 113
           N++RT  +H+      +DE++Q +A  K
Sbjct: 331 NEHRTLERHNIRTVAQSDETLQMIASMK 358


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  NQYRTRRKHHSVLWQPADESVQNVADGK 113
           N++RT  +H+      +DE++Q +A  K
Sbjct: 331 NEHRTLERHNIRTVAQSDETLQMIASMK 358


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  NQYRTRRKHHSVLWQPADESVQNVADGK 113
           N++RT  +H+      +DE++Q +A  K
Sbjct: 331 NEHRTLERHNIRTVAQSDETLQMIASMK 358


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 RALVMAKTVCVCVCVLPVMEFE 517
           + +V+   +CVCV  L + E +
Sbjct: 2   KTIVIISAICVCVGALTLEELQ 23


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 RALVMAKTVCVCVCVLPVMEFEN 520
           + +V+   +CVCV  + + E ++
Sbjct: 2   KTIVIISAICVCVSAMTLDELKS 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,783
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)