Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20247
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ b...    32   0.29 
At2g02910.1 68415.m00240 expressed protein contains Pfam profile...    29   1.5  
At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containi...    28   3.6  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    28   3.6  
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    28   4.7  
At5g65510.1 68418.m08241 ovule development protein, putative sim...    27   6.2  
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    27   6.2  
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote...    27   8.3  
At3g10380.1 68416.m01244 exocyst complex component-related ident...    27   8.3  

>At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ
           boundaries domain protein 29 (LBD29) identical to
           SP|Q9M2J7 LOB domain protein 29 {Arabidopsis thaliana};
           supported by full-length cDNA gi:17227167
          Length = 218

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = -3

Query: 369 CKTEGSTRRLPASWIFALQKTERLSWHVPSTDFRAVNPYR*RSCANVKYEVRQRSAAHIS 190
           C  +G++       +F      +L  H+P +D       R  +   + YE + R    + 
Sbjct: 33  CHEQGASHFAAIHKVFGASNASKLLSHLPISD-------RCEAAITISYEAQAR----LQ 81

Query: 189 DPCVHGESVAFAFSQQKQNVQDEIKFCRQQ 100
           DP     S  FA  QQ  N+Q E++  +QQ
Sbjct: 82  DPIYGCVSHIFALQQQVVNLQAELEILKQQ 111


>At2g02910.1 68415.m00240 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 460

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 257 RTGSVPVQMSNMRFDNALLHISLILVFMVRASPLLSLNRSKTYRTK*SFAVSNILDALVC 78
           +TG VP  +S+  F ++   I L     +   P+L ++    +RTK  FA+SN  D    
Sbjct: 274 KTGKVPKFLSHRLFPSSRYSIWLDSKMRLTTDPMLIIDFF-LWRTKSEFAISNHYDRHCV 332

Query: 77  W 75
           W
Sbjct: 333 W 333


>At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 415

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 337 CLLDLCFAENREALLART-FDRLSGGKSVPVAFL 239
           C L LCFAEN   L ART +D +     VP  F+
Sbjct: 86  CALMLCFAENGFVLRARTIWDEIINSCFVPDVFV 119


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 149 EKAKATLSP*TQGSEICAAERCRTSYLTFAQERYRYGFTARKSV 280
           ++A+  + P     E+     C  +YLT + ER+  G T RK V
Sbjct: 38  KRARWIVEPVRGSFEVIRLRSCYGNYLTASNERFLLGATGRKVV 81


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 149 EKAKATLSP*TQGSEICAAERCRTSYLTFAQERYRYGFTARKSVE 283
           + A+ T+ P      +   + C   YLT + ER+  G T +K ++
Sbjct: 264 KNARWTVEPVRDSFHVIRLKSCYGKYLTASNERFLLGATGKKVIQ 308


>At5g65510.1 68418.m08241 ovule development protein, putative
           similar to AINTEGUMENTA (GI:1209099) [Arabidopsis
           thaliana]
          Length = 437

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 525 DMFSNSIT---GSTHTQTHTVFAITRARLQNSGDVTSS 421
           ++F +S T   G TH  +H V + T A+L  +GD T++
Sbjct: 80  EIFDDSTTSNIGGTHLSSHVVESSTTAKLGFNGDCTTT 117


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UBS4 DnaJ
           homolog subfamily B member 11 precursor Homo sapiens;
           contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 458 EHDFRIQETSRVHLHTSPSLRAVFD*LGHGARPKAALVGYL 336
           ++D+ I+    V  +T+   RA +   GH + P+A LVG L
Sbjct: 93  QYDYAIEHPEEVFYNTAQYYRAKY---GHKSDPRAVLVGLL 130


>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase 5,
           Arabidopsis thaliana, PIR1:S27756
          Length = 1013

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 522 MFSNSITGSTHTQTHTVFAITRARLQN---SGDVTSSFAHITKSPGSIRLAGTR 370
           +F+N+ TG       T  ++ R R+QN   +G +   F  + K    + LAG R
Sbjct: 387 LFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQ-RLELAGNR 439


>At3g10380.1 68416.m01244 exocyst complex component-related
           identical to Probable exocyst complex component Sec8
           (Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
           similarity to Exocyst complex component Sec8 (rSec8)
           (Swiss-Prot:Q62824) [Rattus norvegicus]
          Length = 1053

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 206 ERCRTSYLTFAQERYRYGFTARKSVE 283
           ERCRTSY+    E+  Y    R  +E
Sbjct: 736 ERCRTSYMEAVLEKLSYMLIGRHDIE 761


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,301,916
Number of Sequences: 28952
Number of extensions: 258161
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)