Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20246
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 87 1e-18
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 84 6e-18
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.2
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 1.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 2.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 2.8
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 2.8
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 24 6.5
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 24 8.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 24 8.6
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 86.6 bits (205), Expect = 1e-18
Identities = 41/93 (44%), Positives = 62/93 (66%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 181
++ + IP G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS+K A
Sbjct: 8 DETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGSRKHNA 66
Query: 182 AVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPL 280
+RT S + NMI GVT+GF+YKM L P+
Sbjct: 67 CIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPI 99
Score = 47.2 bits (107), Expect = 8e-07
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKMAP 366
VYAHFPIN TE +++EIRN LGE+ R +K P
Sbjct: 93 VYAHFPININLTENGTVVEIRNFLGERITRVIKCLP 128
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 84.2 bits (199), Expect = 6e-18
Identities = 40/93 (43%), Positives = 61/93 (65%)
Frame = +2
Query: 2 NQKVKIPXGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 181
++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K A
Sbjct: 8 DETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGSRKHNA 66
Query: 182 AVRTVCSHVENMIKGVTKGFQYKMXLCMLTSPL 280
+R+V S + NMI GVT+GF+YKM L P+
Sbjct: 67 CIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPI 99
Score = 47.2 bits (107), Expect = 8e-07
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 259 VYAHFPINXVTTEGNSIIEIRNXLGEKXIRRVKMAP 366
VYAHFPIN TE +++EIRN LGE+ R +K P
Sbjct: 93 VYAHFPININLTENGTVVEIRNFLGERITRVIKCLP 128
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 95 FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 232
F H +VD+ + L + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 196 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 50
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +2
Query: 47 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 226
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 227 VTK 235
++K
Sbjct: 1170 LSK 1172
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 190 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 68
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 180 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 70
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/44 (20%), Positives = 19/44 (43%)
Frame = -2
Query: 151 LNLQETRVYHANVNSQVFEVPFENSAGPFNCHQTRFHMDRKPVW 20
L+ Q +++ + + ++ N F+CH+ F VW
Sbjct: 259 LHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVW 302
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 131 PRLLKVEKWFGSKKELAAVRTVCSHVENMIK 223
PRL+ +KW L A+ ++ E ++K
Sbjct: 377 PRLIPSQKWSERHAALMAISSIAEGAEKLMK 407
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 238 LPIQDAAVYAHFPIN 282
+PI DAA+YA PIN
Sbjct: 408 VPIIDAAIYAANPIN 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,895
Number of Sequences: 5004
Number of extensions: 26158
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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